This paper addresses reconstruction of a temporally deforming 3D coronary vessel tree, i.e., 4D reconstruction from a sequence of angiographic X-ray images acquired by a rotating C-arm. Our algorithm starts from a 3D coronary tree that was reconstructed from images of one cardiac phase. Driven by gradient vector flow (GVF) fields, the method then estimates deformation such that projections of deformed models align with X-ray images of corresponding cardiac phases. To allow robust tracking of the coronary tree, the deformation estimation is regularized by smoothness and cyclic deformation constraints. Extensive qualitative and quantitative tests on clinical data sets suggest that our algorithm reconstructs accurate 4D coronary trees and regularized estimation significantly improves robustness. Our experiments also suggest that a hierarchy of deformation models with increasing complexities are desirable when input data are noisy or when the quality of the 3D model is low.
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Plant Divers
November 2024
Germplasm Bank of Wild Species & Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China.
The angiosperm family Elaeagnaceae comprises three genera and . 100 species distributed mainly in Eurasia and North America. Little family-wide phylogenetic and biogeographic research on Elaeagnaceae has been conducted, limiting the application and preservation of natural genetic resources.
View Article and Find Full Text PDFAm J Bot
January 2025
National Herbarium of NSW, Botanic Gardens of Sydney, Mount Annan, NSW, Australia.
Premise: Magnoliids are a strongly supported clade of angiosperms. Previous phylogenetic studies based primarily on analyses of a limited number of mostly plastid markers have led to the current classification of magnoliids into four orders and 18 families. However, uncertainty remains regarding the placement of several families.
View Article and Find Full Text PDFThe subfamily Mileewinae in China comprises one tribe (Mileewini), four genera (, , , ), and 71 species, yet only 11 mitochondrial genomes have been published. This study aimed to elucidate ambiguous diagnostic traits in traditional taxonomy and examined phylogenetic relationships among genera by sequencing mitochondrial genomes from 16 species. The lengths of the mitochondrial genomes ranged from 14,532 to 15,280 bp, exhibiting an AT content of 77.
View Article and Find Full Text PDFVirus Evol
November 2024
Faculty of Health Sciences, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
Hypermutated proviruses, which arise in a single Human Immunodeficiency Virus (HIV) replication cycle when host antiviral APOBEC3 proteins introduce extensive guanine to adenine mutations throughout the viral genome, persist in all people living with HIV receiving antiretroviral therapy (ART). However, hypermutated sequences are routinely excluded from phylogenetic trees because their extensive mutations complicate phylogenetic inference, and as a result, we know relatively little about their within-host evolutionary origins and dynamics. Using >1400 longitudinal single-genome-amplified HIV sequences isolated from six women over a median of 18 years of follow-up-including plasma HIV RNA sequences collected over a median of 9 years between seroconversion and ART initiation, and >500 proviruses isolated over a median of 9 years on ART-we evaluated three approaches for masking hypermutation in nucleotide alignments.
View Article and Find Full Text PDFMol Phylogenet Evol
January 2025
School of Ecology, Sun Yat-sen University, Shenzhen 518107 China; State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources, Sun Yat-sen University, Guangzhou 510275 China. Electronic address:
The Cyphotheca-Plagiopetalum-Sporoxeia clade (Sonerileae, Melastomataceae) comprises Cyphotheca Diels, Plagiopetalum Rehder, SporoxeiaW.W.Sm.
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