High mitochondrial DNA sequence diversity in the parthenogenetic earthworm Dendrobaena octaedra.

Heredity (Edinb)

Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland.

Published: October 2010

Apomictic parthenogens are clonal organisms with limited genetic opportunity for increasing diversity beyond mutation. However, such species can be successful and have been shown to harbor more genetic diversity than might be expected. Here we surveyed diversity of the cytochrome oxidase subunit I gene from the mitochondrial genome of the earthworm Dendrobaena octaedra, an apomictic parthenogen. Diversity estimates made previously from allozyme markers for this species were high, but could have been affected by a detection bias, namely variable expression of alleles in the polyploid genome. We found similarly high mtDNA diversity over three localities in Finland, each represented by two sites; either with or without anthropogenic soil metal contamination. A single haplotype was most common over all sites, and over two thirds of all haplotypes sampled were similar to it in sequence (only varying by 1-3 substitutions). However, more divergent rare haplotypes were also found in one locality, Imatra, in southeast Finland close to the Karelian Isthmus. Metal contamination in the soil did not have a significant effect on genetic diversity, although metal exposure is known to be detrimental to the worms. There was no evidence for cryptic species within D. octaedra and phylogenetic analyses showed some structure of lineages that may have diverged in historical glacial refugia. Other mechanisms, such as rare genetic exchange with closely related species or high mutation and dispersal rates may explain high genetic diversity in D. octaedra.

Download full-text PDF

Source
http://dx.doi.org/10.1038/hdy.2010.31DOI Listing

Publication Analysis

Top Keywords

genetic diversity
12
diversity
8
earthworm dendrobaena
8
dendrobaena octaedra
8
octaedra apomictic
8
species high
8
metal contamination
8
high
5
genetic
5
high mitochondrial
4

Similar Publications

The demographic history of a population, and the distribution of fitness effects (DFE) of newly arising mutations in functional genomic regions, are fundamental factors dictating both genetic variation and evolutionary trajectories. Although both demographic and DFE inference has been performed extensively in humans, these approaches have generally either been limited to simple demographic models involving a single population, or, where a complex population history has been inferred, without accounting for the potentially confounding effects of selection at linked sites. Taking advantage of the coding-sparse nature of the genome, we propose a 2-step approach in which coalescent simulations are first used to infer a complex multi-population demographic model, utilizing large non-functional regions that are likely free from the effects of background selection.

View Article and Find Full Text PDF

Genetic diversity and selection signatures in sheep breeds.

J Appl Genet

January 2025

Departamento de Ciências Exatas, Universidade Estadual Paulista (UNESP), Faculdade de Ciências Agrárias e Veterinárias, Jaboticabal, Brazil.

Natural and artificial selection in domesticated animals can cause specific changes in genomic regions known as selection signatures. Our study used the integrated haplotype score (iHS) and Tajima's D tests within non-overlapping windows of 100 kb to identify selection signatures, in addition to genetic diversity and linkage disequilibrium estimates in 9498 sheep from breeds in Ireland (Belclare, Charollais, Suffolk, Texel, and Vendeen). The mean observed and expected heterozygosity for all the sheep breeds were 0.

View Article and Find Full Text PDF

Importance of pre-mRNA splicing and its study tools in plants.

Adv Biotechnol (Singap)

February 2024

National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for Research and Development of Fine Chemicals, Guizhou University, Guiyang, China.

Alternative splicing (AS) significantly enriches the diversity of transcriptomes and proteomes, playing a pivotal role in the physiology and development of eukaryotic organisms. With the continuous advancement of high-throughput sequencing technologies, an increasing number of novel transcript isoforms, along with factors related to splicing and their associated functions, are being unveiled. In this review, we succinctly summarize and compare the different splicing mechanisms across prokaryotes and eukaryotes.

View Article and Find Full Text PDF

Decoding the genetic blueprint: regulation of key agricultural traits in sorghum.

Adv Biotechnol (Singap)

September 2024

School of Agriculture and Biotechnology, Sun Yat-sen University, Shenzhen, 518107, P. R. China.

Sorghum, the fifth most important crop globally, thrives in challenging environments such as arid, saline-alkaline, and infertile regions. This remarkable crop, one of the earliest crops domesticated by humans, offers high biomass and stress-specific properties that render it suitable for a variety of uses including food, feed, bioenergy, and biomaterials. What's truly exciting is the extensive phenotypic variation in sorghum, particularly in traits related to growth, development, and stress resistance.

View Article and Find Full Text PDF

Mining microbial and metabolic dark matter in extreme environments: a roadmap for harnessing the power of multi-omics data.

Adv Biotechnol (Singap)

August 2024

State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Stress Biology and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, PR China.

Extreme environments such as hyperarid, hypersaline, hyperthermal environments, and the deep sea harbor diverse microbial communities, which are specially adapted to extreme conditions and are known as extremophiles. These extremophilic organisms have developed unique survival strategies, making them ideal models for studying microbial diversity, evolution, and adaptation to adversity. They also play critical roles in biogeochemical cycles.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!