Topological phonon modes and their role in dynamic instability of microtubules.

Phys Rev Lett

Department of Physics, Yeshiva University, New York, New York 10016, USA.

Published: December 2009

Microtubules (MTs) are self-assembled hollow protein tubes playing important functions in live cells. Their building block is a protein called tubulin, which self-assembles in a particulate 2 dimensional lattice. We study the vibrational modes of this lattice and find Dirac points in the phonon spectrum. We discuss a splitting of the Dirac points that leads to phonon bands with nonzero Chern numbers, signaling the existence of topological vibrational modes localized at MTs edges, which we indeed observe after explicit calculations. Since these modes are robust against the large changes occurring at the edges during the dynamic cycle of the MTs, we can build a simple mechanical model to illustrate how they would participate in this phenomenon.

Download full-text PDF

Source
http://dx.doi.org/10.1103/PhysRevLett.103.248101DOI Listing

Publication Analysis

Top Keywords

vibrational modes
8
dirac points
8
topological phonon
4
modes
4
phonon modes
4
modes role
4
role dynamic
4
dynamic instability
4
instability microtubules
4
microtubules microtubules
4

Similar Publications

Vanadium dioxide ([Formula: see text]) is a favorable material platform of modern optoelectronics, since it manifests the reversible temperature-induced insulator-metal transition (IMT) with an abrupt and rapid changes in the conductivity and optical properties. It makes possible applications of such a phase-change material in the ultra-fast optoelectronics and terahertz (THz) technology. Despite the considerable interest to this material, data on its broadband electrodynamic response in different states are still missing in the literature.

View Article and Find Full Text PDF

Digital quantum simulation of cosmological particle creation with IBM quantum computers.

Sci Rep

January 2025

Departamento de Física Teórica, Universidad Autónoma de Madrid, 28049, Madrid, Spain.

We use digital quantum computing to simulate the creation of particles in a dynamic spacetime. We consider a system consisting of a minimally coupled massive quantum scalar field in a spacetime undergoing homogeneous and isotropic expansion, transitioning from one stationary state to another through a brief inflationary period. We simulate two vibration modes, positive and negative for a given field momentum, by devising a quantum circuit that implements the time evolution.

View Article and Find Full Text PDF

Based on the DCV-C system of fullerene acceptor organic solar cell active materials, the charge transfer process of D-A type molecular materials under the action of an external electric field () was explored. Within the range of electric field application, the excited state characteristics exhibit certain regular changes. Based on reducing the excitation energy, the excitation mode shows a trend of developing toward low excited states.

View Article and Find Full Text PDF

Aerosols containing biological material (i.e., bioaerosols) impact public health by transporting toxins, allergens, and diseases and impact the climate by nucleating ice crystals and cloud droplets.

View Article and Find Full Text PDF

Understanding the ultrafast vibrational relaxation following photoexcitation of molecules in a condensed phase is essential to predict the outcome and improve the efficiency of photoinduced molecular processes. Here, the vibrational decoherence and energy relaxation of a binuclear complex, [Pt2(P2O5H2)4]4- (PtPOP), upon electronic excitation in liquid water and acetonitrile are investigated through direct adiabatic dynamics simulations. A quantum mechanics/molecular mechanics (QM/MM) scheme is used where the excited state of the complex is modeled with orbital-optimized density functional calculations while solvent molecules are described using potential energy functions.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!