We introduce an imaging modality that, by offsetting pixel-exposure times during capture of a single image frame, embeds temporal information in each frame. This allows simultaneous acquisition of full-resolution images at native detector frame rates and high-speed image sequences at reduced resolution, without increasing bandwidth requirements. We demonstrate this method using macroscopic and microscopic examples, including imaging calcium transients in heart cells at 250 Hz using a 10-Hz megapixel camera.
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http://dx.doi.org/10.1038/nmeth.1429 | DOI Listing |
J Biophotonics
January 2025
Univ. Grenoble Alpes, CNRS, LIPhy, Grenoble, France.
A challenge in neuroimaging is acquiring frame sequences at high temporal resolution from the largest possible number of pixels. Measuring 1%-10% fluorescence changes normally requires 12-bit or higher bit depth, constraining the frame size allowing imaging in the kHz range. We resolved Ca or membrane potential signals from cell populations or single neurons in brain slices by acquiring fluorescence at 8-bit depth and by binning pixels offline, achieving unprecedented frame sizes at kHz rates.
View Article and Find Full Text PDFPhys Biol
January 2025
Department of Biological Sciences, Tata Institute of Fundamental Research Department of Biological Sciences, Tata Institute of Fundamental Research, Homi Bhabha road, Navy Nagar, Colaba, Mumbai-400005, INDIA, Mumbai, 400005, INDIA.
Tracking and motion analyses of semi-flexible biopolymer networks from time-lapse microscopy images are important tools that enable quantitative measurements to unravel the dynamic and mechanical properties of biopolymers in living tissues, crucial for understanding their organization and function. Biopolymer networks are challenging to track due to continuous stochastic transitions, such as merges and splits, which cause local neighbourhood rearrangements over short time and length scales. To address this, we propose the STIPS algorithm (Spatio Temporal Information on Pixel Subsets) to track these events by creating pixel subsets that link trajectories across frames.
View Article and Find Full Text PDFEnviron Res
January 2025
School of Marine Sciences, Sun Yat-sen University, Zhuhai, 519082, China; Pearl River Estuary Marine Ecosystem Research Station, Ministry of Education, Zhuhai, 519082, China; Guangdong Provincial Key Laboratory of Marine Resources and Coastal Engineering, Zhuhai, 519082, China.
Temporal variability and associated driving factors of sea surface chlorophyll-a concentration (Chl-a) in coastal waters have been extensively studied worldwide; however, the importance and spatial heterogeneity of these driving factors remain insufficiently documented. This study addressed this gap by investigating the Pearl River Estuary (PRE) from August 2002 to June 2016, using long-term remote sensing-derived data of Chl-a and potential driving factors, including total suspended solids (TSS), precipitation, photosynthetically active radiation (PAR), and sea surface temperature (SST); and in situ measurements of potential driving factors, including river discharge, wind speed, alongshore wind (u), cross-shore wind (v), and tidal range. A pixel-by-pixel correlation analysis was conducted to preliminarily examine the relationships between these potential driving factors and Chl-a.
View Article and Find Full Text PDFEnviron Monit Assess
January 2025
Universidad Nacional de Córdoba - Facultad de Ciencias Agropecuarias, X5000HUA, Córdoba, Argentina.
Landscape metrics (LM) play a crucial role in fields such as urban planning, ecology, and environmental research, providing insights into the ecological and functional dynamics of ecosystems. However, in dynamic systems, generating thematic maps for LM analysis poses challenges due to the substantial data volume required and issues such as cloud cover interruptions. The aim of this study was to compare the accuracy of land cover maps produced by three temporal aggregation methods: median reflectance, maximum normalised difference vegetation index (NDVI), and a two-date image stack using Sentinel-2 (S2) and then to analyse their implications for LM calculation.
View Article and Find Full Text PDFNeural Netw
December 2024
Department of Artificial Intelligence, Korea University, South Korea. Electronic address:
Moiré patterns, created by the interference between overlapping grid patterns in the pixel space, degrade the visual quality of images and videos. Therefore, removing such patterns (demoiréing) is crucial, yet remains a challenge due to their complexities in sizes and distortions. Conventional methods mainly tackle this task by only exploiting the spatial domain of the input images, limiting their capabilities in removing large-scale moiré patterns.
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