Due to the high yolk content and relatively large size of the Helobdella (leech) embryo, it is preferable to examine the embryos in a cleared whole-mount preparation after they have been stained. Three whole-mount procedures suitable for leech embryos are described here. The glycerol whole mount is quick and convenient because it does not require dehydration. However, prolonged incubation in buffered glycerol could cause the yolk to turn dark purple. Thus, it is not suitable for yolk-containing specimens that are intended for light microscopy. For fluorescence microscopy, anti-fading reagent can be added to the buffered glycerol. This article includes a recipe that works quite well for leech embryos. Also included are two alternative methods that require embryo dehydration, but have the advantage of clearing yolk-containing tissue. One method relies on the use of benzyl benzoate:benzyl alcohol (BBBA), a solution that provides the best clearing of yolk-containing tissue in the leech embryo. It is suitable for both fluorescence and light microscopy. Another alternative is the Epon whole-mount preparation. Epon is not quite as effective in clearing the yolk, but the viscosity of Epon facilitates orienting the specimens for imaging. As with BBBA, Epon is suitable for both light and fluorescence microscopy.
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http://dx.doi.org/10.1101/pdb.prot5195 | DOI Listing |
Br J Pharmacol
January 2025
Department of Pharmaceutical and Pharmacological Sciences, University of Padua, Padua, Italy.
Background And Purpose: Inflammatory bowel disease (IBD) patients display genetic polymorphisms in toll-like receptor 4 (TLR4) genes, contributing to dysregulate enteric nervous system (ENS) circuits with increased levels of 5-HT and alteration of the neuroimmune crosstalk. In this study, we investigated the impact of TLR4 signalling on mouse ENS dysfunction caused by dextran sulphate sodium (DSS)-induced ileitis.
Experimental Approach: Male C57BL/6J (wild-type [WT]) and TLR4 mice (10 ± 2 weeks old) received 2% DSS in drinking water for 5 days and then were switched to 3-day regular drinking water.
STAR Protoc
January 2025
Laboratory of Developmental Neurobiology, International Institute of Molecular Mechanisms and Machines, 02-247 Warsaw, Poland; Laboratory of Molecular and Cellular Neurobiology, International Institute of Molecular and Cell Biology in Warsaw, 02-109 Warsaw, Poland. Electronic address:
Due to their small size and transparency, larval zebrafish are a useful model for whole-brain imaging. Here, we present a protocol for the visualization of phosphorylated Rps6, a marker of mechanistic target of rapamycin complex 1 (mTORC1) activity, in the zebrafish brains at 5 days post fertilization (dpf), using whole-mount immunofluorescence and light-sheet microscopy. We describe steps for sample preparation, storage, staining, and imaging.
View Article and Find Full Text PDFEur J Nucl Med Mol Imaging
January 2025
Department of Radiation Oncology, University Medical Centre Freiburg, Robert-Koch Straße 3, 79106, Freiburg, Germany.
Purpose: Prostate-specific membrane-antigen positron emission tomography (PSMA PET) is a promising candidate for non-invasive characterization of prostate cancer (PCa). This study evaluated whether PET with tracers [Ga]Ga-PSMA-11 or [F]PSMA-1007 is capable to depict intratumour heterogeneity of histological PSMA expression.
Methods: Thirty-five patients with biopsy-proven primary PCa without evidence of metastatic disease nor prior interventions were prospectively enrolled.
STAR Protoc
December 2024
Instituto de Medicina Molecular João Lobo Antunes, Faculdade de Medicina, Universidade de Lisboa, 1649-028 Lisboa, Portugal; Instituto de Histologia e Biologia do Desenvolvimento, Faculdade de Medicina, Universidade de Lisboa, 1649-028 Lisboa, Portugal; GIMM - Gulbenkian Institute for Molecular Medicina, Avenida Prof. Egas Moniz, 1649-035 Lisboa, Portugal. Electronic address:
The vascular repair, a pivotal element of the spinal cord (SC) injury response, has been notably neglected in zebrafish research. Here, we detail the extraction and dissection of whole-mount zebrafish SCs and the optimized whole-mount immunofluorescence staining and clearing protocols for the visualization of SC structures, such as the vascular network. Additional downstream applications of these samples, from gelatin embedding to cryosectioning and tissue staining, can be done after clearing reversion and are also described in this work.
View Article and Find Full Text PDFSTAR Protoc
December 2024
Wellcome-Wolfson Institute for Experimental Medicine, Queen's University, Belfast BT9 7BL, UK. Electronic address:
The developing vasculature of the post-natal mouse retina is a powerful model to discover mechanisms of vessel formation and to test modulators of neovascularization. We present a protocol for single-molecule fluorescent in situ hybridization (smFISH) in whole-mount mouse retinas enabling the detection of individual mRNAs in vascular endothelial cells. We describe procedures from initial retina preparation to smFISH and detection.
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