Classical Monte Carlo (MC) simulations of D(2) molecules physisorbed on LiF(001) surfaces are reported and show a series of interesting commensurate structure forms, viz., p(2x2) -->p(8x2) -->p(4x2), with coverages Theta=0.5, 0.625, and 0.75, respectively, and are stable up to 8 K. These structures are consistent with recent helium atom scattering (HAS) results (the p(4x2) is not observed) in terms of coverage and stability, but disagree in terms of symmetry. The p(2x2) structure contains two D(2) molecules per unit cell, with each molecule lying parallel to the plane of the surface directly above every other cationic site. For the p(4x2) structure, there are two kinds of adsorption sites: a parallel site, as in the case of p(2x2), and a tilted site, where the D(2) molecules sit between cationic and anionic sites with the molecular axis directed toward the anionic site, with a tilt angle of theta approximately 63 degrees. Perturbation theory calculations show that the adsorbed D(2) molecules are azimuthally delocalized and hence the structures are indeed c-type. Our calculations also indicate that o-D(2) and helicoptering p-D(2) species prefer cationic sites, compared to cartwheeling p-D(2) species.
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http://dx.doi.org/10.1016/j.jcis.2009.09.022 | DOI Listing |
Biochim Biophys Acta
January 2014
Proteo-Science Research Center, Ehime University, Bunkyo-cho, Matsuyama, Ehime 790-8577, Japan; PRESTO, Science and Technology Agency (JST), 4-1-8, Honcho, Kawaguchi, Saitama 332-0012, Japan. Electronic address:
In Photosystem II (PSII) of the cyanobacterium Thermosynechococcus elongatus, glutamate 130 in the high-light variant of the D1-subunit (PsbA3) was changed to glutamine in a strain lacking the two other genes for D1, psbA1 and psbA2. The resulting PSII (PsbA3/Glu130Gln) was compared with those from the "native" high-light (PsbA3-PSII) and low-light (PsbA1-PSII) variants, which differ by 21 amino acid including Glu130Gln. H-bonding from D1-Glu130Gln to the primary electron acceptor, PheophytinD1 (PheoD1), is known to affect the Em of the PheoD1/PheoD1(-) couple.
View Article and Find Full Text PDFBiochim Biophys Acta
August 2012
Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Most of the chlorophyll (Chl) cofactors in photosystem II (PSII) from Acaryochloris marina are Chld, although a few Chla molecules are also present. To evaluate the possibility that Chla may participate in the P(D1)/P(D2) Chl pair in PSII from A. marina, the P(D1)(•+)/P(D2)(•+) charge ratio was investigated using the PSII crystal structure analyzed at 1.
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