The control of metal-ligand exchange in a confined environment is of primary importance for understanding thermodynamics and kinetics of the electron transfer process governing the reactivity of enzymes. This study reveals an unprecedented change of the Cu(II)/Cu(I) binding and redox properties through a subtle control of the access to the labile site by a protein channel mimic. The cavity effect was estimated from cyclic voltammetry investigations by comparison of two complexes displaying the same coordination sphere (tmpa) and differing by the presence or absence of a calix[6]arene cone surrounding the metal labile site L. Effects on thermodynamics are illustrated by important shifts of E(1/2) toward higher values for the calix complexes. This is ascribable to the protection of the labile site of the open-shell system from the polar medium. Such a cavity control also generates specific stabilizations. This is exemplified by an impressively exalted affinity of the calixarene system for MeCN, and by the detection of a kinetic intermediate, a noncoordinated DMF guest molecule floating inside the cone. Kinetically, a unique dissymmetry between the Cu(I) and Cu(II) ligand exchange capacity is highlighted. At the CV time scale, the guest interconversion is only feasible after reduction of Cu(II) to Cu(I). Such a redox-switch mechanism results from the blocking of the associative process at the Cu(II) state, imposed by the calixarene funnel. All of this suggests that the embedment of a reactive redox metal ion in a funnel-like cavity can play a crucial role in catalysis, particularly for metallo-enzymes associating electron transfer and ligand exchange.
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http://dx.doi.org/10.1021/ja9055905 | DOI Listing |
Plant Physiol
December 2024
CNR, National Research Council, Institute of Agricultural Biology and Biotechnology, Via Moruzzi 1, 56124 Pisa, Italy.
Transcription factors belonging to the large ethylene response factor (ERF) family are involved in plant responses to biotic and abiotic stresses. Among the ERFs, OCTADECANOID-RESPONSIVE ARABIDOPSIS 59 (ORA59) integrates ethylene and jasmonic acid signaling to regulate resistance to necrotrophic pathogens. The ERF group ERFVII encodes oxygen-labile proteins that are required for oxygen sensing and are stabilized by hypoxia established at the site of Botrytis (Botrytis cinerea) infection.
View Article and Find Full Text PDFJ Mol Biol
February 2025
Department of Chemistry, Purdue University, West Lafayette, IN 47907, USA. Electronic address:
AMPylation is a post-translational modification (PTM) whereby adenosine monophosphate (AMP) from adenosine triphosphate (ATP) is transferred onto protein hydroxyl groups of serine, threonine, or tyrosine. Recently, an actin-dependent AMPylase namely LnaB from the bacterial pathogen Legionella pneumophila was found to AMPylate phosphate groups of phosphoribosylated ubiquitin and Src family kinases. LnaB represents an evolutionarily distinct family of AMPylases with conserved active site Ser-His-Glu residues.
View Article and Find Full Text PDFChemistry
December 2024
Institute for Catalysis, Hokkaido University, Sapporo, Hokkaido 001-0021, Japan.
Most molecular catalysts have been developed employing polar functional groups as catalytic sites. However, the use of non-polar functional groups for catalysis has received less attention due to their modest molecular interactions while the bioorthogonal reactivity of non-polar alkenes as substrates is frequently used in click chemistry. In this study, we conducted mechanistic studies on the catalysis of trans-cyclooctene (TCO) derivatives with the strained olefin as the catalytic site using kinetic and computational analyses to aid the design of more active olefin catalysts.
View Article and Find Full Text PDFDalton Trans
January 2025
Department of Chemistry, Purdue University, West Lafayette, Indiana 47906, USA.
Peroxynitrite (ONOO) is a highly reactive nitrogen species that can cause significant damage to proteins, lipids, and DNA. Various enzymes, including metalloenzymes, play crucial roles in reducing ONOO concentrations to protect cellular components. While the interaction of ONOO with heme proteins is well known, the reduction by Cu-containing proteins is less studied.
View Article and Find Full Text PDFJ Am Chem Soc
December 2024
Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.
A monocationic dicopper(I,I) nitrite complex [Cu(μ-κ:κ-ON)DPFN][NTf] () (DPFN = 2,7-bis(fluoro-di(2-pyridyl)methyl)-1,8-naphthyridine, NTf = N(SOCF)), was synthesized by treatment of a dicopper acetonitrile complex, [Cu(μ-MeCN)DPFN][NTf] (), with tetrabutylammonium nitrite ([BuN][NO]). DFT calculations indicate that is one of three linkage isomers that are close in energy and presumably accessible in solution. Reaction of the μ-κ:κ-ON complex with -TolSH produces nitrous acid (HONO) and the corresponding dicopper thiolate species via an acid-base exchange reaction.
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