Calocidae constitute a hypothesised monophyletic group of caddisflies (Trichoptera) being geographically restricted to New Zealand (one genus) and Australia (five genera). This analysis tests the monophyly of the family based on sequences from five different molecular genes. The complete data set includes 29 species and covers a complete genus representation of the Calocidae as well as representatives of other families in which one or more calocid genera have been classified. Sequences from two mitochondrial (cytochrome oxidase I and 16S) and three nuclear (elongation factor 1-alpha, RNA polymerase-II, and Cadherin) genes were used, resulting in a 3958bp data set and 37.1% parsimony informative characters. The Cadherin (CAD) and RNA polymerase-II (POL-II) genes are used for the first time for revealing Trichoptera phylogenies. The character matrix was analyzed by using maximum parsimony (MP) and Bayesian criteria, the latter by applying three different partition strategies for comparison. Two most parsimonious trees were found, differing in the position of one clade within the sister-group to a monophyletic Calocidae. The Bayesian tree based on the maximum number of partitions differs from trees based on a reduced partition analysis with respect to taxa outside the current circumscription of Calocidae. Both the MP and Bayesian analyses left Calocidae monophyletic, with a monophyletic clade of all Australian genera being sister-group to the New Zealand genus. The results from the agreement subtree analysis demonstrates that CAD performs well both separately and in combination with other genes and adds substantial resolution to the calocid phylogeny in a combined MP analysis.
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http://dx.doi.org/10.1016/j.ympev.2009.09.025 | DOI Listing |
Mar Drugs
January 2025
Institut de Recherche pour le Développement (IRD), UMR 241-SECOPOL (IFREMER, ILM, IRD, UPF), P.O. Box 6570, 98702 Faa'a, Tahiti, French Polynesia.
Ciguatera poisoning (CP) is caused by the consumption of marine products contaminated with ciguatoxins (CTXs) produced by dinoflagellates of the genus . Analytical methods for CTXs, involving the extraction/purification of trace quantities of CTXs from complex matrices, are numerous in the literature. However, little information on their effectiveness for nonpolar CTXs is available, yet these congeners, contributing to the risk of CP, are required for the establishment of effective food safety monitoring programs.
View Article and Find Full Text PDFJ Chem Ecol
January 2025
Canterbury Research Centre, The New Zealand Institute for Plant and Food Research Limited, Lincoln, 8152, New Zealand.
The identification of sex pheromones in native New Zealand moths has been limited, largely due to their minimal pest impact on agricultural ecosystems. The kōwhai moth, Uresiphita polygonalis maorialis, a native crambid, is known for its herbivory on Sophora spp. and Lupinus arboreus leaves.
View Article and Find Full Text PDFFront Public Health
January 2025
Department of Animal Sciences, Global Food Systems Institute, and Emerging Pathogens Institute, University of Florida, Gainesville, FL, United States.
Background: is associated with environmental enteric dysfunction (EED) and malnutrition in children. infection could be a linchpin between livestock fecal exposure and health outcomes in low-resource smallholder settings.
Methods: We followed a birth cohort of 106 infants in rural smallholder households in eastern Ethiopia up to 13 months of age.
Int J Syst Evol Microbiol
January 2025
China National Research Institute of Food & Fermentation Industries, China Center of Industrial Culture Collection, Beijing 100015, PR China.
is widely used as a starter culture in the production of cheese, yoghurt and various cultured dairy products, which holds considerable significance in both research and practical applications within the food industry. Throughout history, the taxonomy of has undergone several adjustments and revisions. In 1984, based on the result of DNA-DNA hybridization, was reclassified as subsp.
View Article and Find Full Text PDFFungal Syst Evol
December 2024
CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, P. R. Chin.
The application of DNA data on a worldwide sampling has revolutionized the infrageneric classification of the highly diverse ectomycorrhizal genus . Based on collections made in New Zealand, East Asia and North America, this study describes a new subgenus , the ninth subgenus of . Even though BLASTn of the ITS sequences suggested affinities with species of subgenera and the phylogenetic analysis based on a five-locus DNA dataset placed the target samples in an independent major clade that is taxonomically equivalent to subgenus.
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