Hydrogen and dihydrogen bonding of the fluorinated alcohol (CF(3))(2)CHOH with the transition metal complex WH(CO)(2)(NO)(PMe(3))(2) has been explored by a set of four exemplary density functional theory methods that comprises the BP86, PBE, B3LYP and TPSS functionals. The hydride, nitrosyl and carbonyl ligands of the tungsten complex have been considered as sites of protonation. The main effect of fluorination is an increased dihydrogen bond strength by about 15 kJ mol(-1). The [see equation in text] dihydrogen bond is about 10 kJ mol(-1) stronger than the [W]-NOH-OR hydrogen bond. Of the four DFT methods investigated, the BP86 functional provides the most satisfying quantitative as well as qualitative agreement with experiment. The geometry of the [see equation in text] linkage is significantly influenced by secondary dispersive intermolecular bonding. Linear and bent dihydrogen bonds are separated in energy only by about 1 kJ mol(-1), and represent local minima on the corresponding energy hypersurface.
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http://dx.doi.org/10.1039/b900287a | DOI Listing |
Comput Biol Chem
January 2025
National Institute for Genomics and Advanced Biotechnology (NIGAB), National Agricultural Research Center (NARC), Pakistan. Electronic address:
A major threat to world health is the high death rate from gastrointestinal (GI) cancer, especially in Asia, South America, and Europe. The new approaches are needed because of the complexity and heterogeneity of gastrointestinal (GI) cancer, which has made the development of effective treatments difficult. To investigate the potential of peptide-based therapies that target the P21 Activated Kinase 1 (PAK1) in GI cancer, we are using the DBsORF database to predict peptides from the genomes of two bacterial strains: Lactobacillus plantarum and Pediococcus pentosaceus.
View Article and Find Full Text PDFJ Agric Food Chem
January 2025
Department of Plant Biosecurity, College of Plant Protection, China Agricultural University, Beijing 100193, China.
In this context, we reported for the first time the design and development of a self-assembled nanoantiviral pesticide based on the star polycation (SPc) and the broad-spectrum fungicide/antiviral agent seboctylamine for field control of (SMV), a highly destructive plant virus in soybean crops. The SPc could self-assemble with seboctylamine through hydrogen bonds and van der Waals forces, and the complexation with SPc reduced the particle size of seboctylamine to form a spherical seboctylamine/SPc complex. In addition, the contact angle of seboctylamine decreased, and its retention increased with the aid of SPc, indicating excellent wetting properties and strong leaf surface adhesion performance.
View Article and Find Full Text PDFJ Am Chem Soc
January 2025
Hefei National Research Center for Physical Sciences at the Microscale, Department of Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, P. R. China.
The local electric field (LEF) plays an important role in the catalytic process; however, the precise construction and manipulation of the electric field microenvironment around the active site remains a significant challenge. Here, we have developed a supramolecular strategy for the implementation of a LEF by introducing the host macrocycle 18-crown-6 (18C6) into a cobalt phthalocyanine (CoPc)-containing covalent organic framework (COF). Utilizing the supramolecular interaction between 18C6 and potassium ion (K), a locally enhanced K concentration around CoPc can be built to generate a LEF microenvironment around the catalytically active Co site.
View Article and Find Full Text PDFChemistry
January 2025
Brandeis University, Chemistry, 415 South Street,, Waltham, 02453, UNITED STATES OF AMERICA.
We designed and synthesized three diacetylene monomers M1-M3 having two NH2 groups. As anticipated, the NH2 groups aided the preorganization of these monomers by N-H…N hydrogen bonding. In the crystals of monomer M1 and M2, the intermolecular N-H…N hydrogen bonding preorganized the diyne units in an orientation suitable for their topochemical polymerization, but in the case of monomer M3, the distance was slightly larger than that recommended for the topochemical reaction.
View Article and Find Full Text PDFDalton Trans
January 2025
Anhui Province Engineering Laboratory of Advanced Building Materials, College of Materials and Chemical Engineering, Anhui Jianzhu University, Hefei, 230601, China.
A universal and green catalytic system for the hydrogenation of unsaturated aldehydes and ketones into the corresponding alcohols with the CC bonds retained under atmospheric hydrogen pressure in the water phase was realized by -functionalized amino ligand-stabilized ruthenium complexes (-PPhCHNHMe)[(CHNHR)]RuCl (R = H, Me, Et) and (-PPhCHNMe)[(CHNHEt)]RuCl with wide substrate compatibility and excellent functionality tolerance. The structural synergism between -PPhCHNHMe and (CHNHEt) achieves the enhanced performance, with a positive correlation with the electron density of the amino ligand.
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