Mechanical stability of bonds and protein interactions has recently become accessible through single molecule mechanical experiments. So far, mechanical information about molecular bond mechanics has been largely limited to a single direction of force application. However, mechanical force acts as a vector in space and hence mechanical stability should depend on the direction of force application. In skeletal muscle, the giant protein titin is anchored in the Z-disk by telethonin. Much of the structural integrity of the Z-disk hinges upon the titin-telethonin bond. In this paper we show that the complex between the muscle proteins titin and telethonin forms a highly directed molecular bond. It is designed to resist ultra-high forces if they are applied in the direction along which it is loaded under physiological conditions, while it breaks easily along other directions. Highly directed molecular bonds match in an ideal way the requirements of tissues subject to mechanical stress.
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http://dx.doi.org/10.1073/pnas.0902312106 | DOI Listing |
J Chem Theory Comput
January 2025
Department of Chemistry, University of Tromsø - The Arctic University of Norway, N9037 Tromsø, Norway.
In this review we discuss the development of methodology for calculating the temperature dependence and thermodynamic activation parameters for chemical reactions in solution and in enzymes, from computer simulations. We outline how this is done by combining the empirical valence bond method with molecular dynamics free energy simulations. In favorable cases it turns out that such simulations can even capture temperature optima for the catalytic rate.
View Article and Find Full Text PDFJ Org Chem
January 2025
Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China.
The selective oxidative cleavage and functionalization of C(OH)-C bonds in tertiary alcohols harbor immense feasibility in organic synthesis and enable the production of high value-added chemicals from renewable biomass. However, it remains a challenge, owing to the inherent kinetic inertness and thermodynamic stability of C(OH)-C bonds and the lack of C-H. Taking the huge potential and challenge of C(OH)-C bond activation and functionalization into consideration, herein, we show the first example of an inexpensive bifunctional ferric nitrate catalyst for catalytic direct oxidation of structurally distinct tertiary alcohols to esters with environmentally benign molecular oxygen as an oxidant and MeOH as a solvent, without the assistance of any additives.
View Article and Find Full Text PDFJ Am Chem Soc
January 2025
Department of Chemistry, University of California Davis, Davis, California 95616, United States.
[FeFe]-hydrogenases are enzymes that catalyze the redox interconversion of H and H using a six-iron active site, known as the H-cluster, which consists of a structurally unique [2Fe] subcluster linked to a [4Fe-4S] subcluster. A set of enzymes, HydG, HydE, and HydF, are responsible for the biosynthesis of the [2Fe] subcluster. Among them, it is well established that HydG cleaves tyrosine into CO and CN and forms a mononuclear [Fe(II)(Cys)(CO)(CN)] complex.
View Article and Find Full Text PDFFood Chem
January 2025
Xiamen Medical College, Xiamen, Fujian 361023, China. Electronic address:
This study analyzed dipeptidyl peptidase-IV (DPP-IV) inhibitory peptides from Tartary buckwheat (Fagopyrum tataricum) protein hydrolysates, known for managing chronic diseases. Simulated gastrointestinal digestion enhanced the inhibitory activity of DPP-IV. Using anion-exchange resin DEAE-52, reverse high-performance liquid chromatography, and LC-MS/MS, eight novel peptides were identified.
View Article and Find Full Text PDFJ Org Chem
January 2025
Key Laboratory of Chemistry and Engineering of Forest Products, State Ethnic Affairs Commission, Guangxi Key Laboratory of Chemistry and Engineering of Forest Products, Guangxi Collaborative Innovation Center for Chemistry and Engineering of Forest Products, Laboratory of Optic-electric Chemo/Biosensing and Molecular Recognition, Education Department of Guangxi Zhuang Autonomous Region, Guangxi Minzu University, Nanning 530006, China.
A regioselective [3 + 2] annulation of β,γ-alkynyl-α-ketimino esters with 1,3-dicarbonyls is disclosed. A series of -selective dihydrofurans bearing an exocyclic double bond and a quaternary carbon center are accessed without the usage of base. Control and deuterium-labeling experiments have been investigated to probe into the reaction mechanism.
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