The explicit polarization (X-Pol) method has been examined using ab initio molecular orbital theory and density functional theory. The X-Pol potential was designed to provide a novel theoretical framework for developing next-generation force fields for biomolecular simulations. Importantly, the X-Pol potential is a general method, which can be employed with any level of electronic structure theory. The present study illustrates the implementation of the X-Pol method using ab initio Hartree-Fock theory and hybrid density functional theory. The computational results are illustrated by considering a set of bimolecular complexes of small organic molecules and ions with water. The computed interaction energies and hydrogen bond geometries are in good accord with CCSD(T) calculations and B3LYP/aug-cc-pVDZ optimizations.
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http://dx.doi.org/10.1021/jp902710a | DOI Listing |
Angew Chem Int Ed Engl
November 2023
College of Chemistry and Chemical Engineering, Central South University, 410083, Changsha, P. R. China.
As a novel class of materials, D-A conjugated macrocycles hold significant promise for chemical science. However, their potential in photovoltaic remains largely untapped due to the complexity of introducing multiple donor and acceptor moieties into the design and synthesis of cyclic π-conjugated molecules. Here, we report a multiple D-A ring-like conjugated molecule (RCM) via the coupling of dimer molecule DBTP-C3 as a template and thiophenes in high yields.
View Article and Find Full Text PDFMicromachines (Basel)
April 2020
Key Laboratory of Optical Technology and Instrument for Medicine, Ministry of Education, University of Shanghai for Science and Technology, Shanghai 200093, China.
Polarization filter is a very important optical device with extinction characteristics. Due to the design flexibility of photonic crystal fibers and the high excitation losses of the gold layer, the polarization filter based on the photonic crystal fiber and surface plasmonic resonance effect is widely studied. Considering these, we present a simple and high-performance polarization filter using the finite element method.
View Article and Find Full Text PDFWe propose and demonstrate the asymmetric direct detection (ADD) of polarization division multiplexed single-sideband (PDM-SSB) signals with orthogonal offset carriers. ADD exploits the photocurrent difference to eliminate the Y-Pol interference in the X-Pol, and the X-Pol signal intensity to eliminate the X-Pol interference in the Y-Pol without resorting to iterative algorithms. This enables not only low-complexity signal linearization but also a simplified receiver front-end composed of a single optical filter, two single-ended photodiodes and two analog-to-digital converters (ADC).
View Article and Find Full Text PDFAcc Chem Res
September 2014
Theoretical Chemistry Institute, State Key Laboratory of Theoretical and Computational Chemistry, Jilin University, Changchun, Jilin Province 130028, People's Republic of China.
Conspectus Molecular mechanical force fields have been successfully used to model condensed-phase and biological systems for a half century. By means of careful parametrization, such classical force fields can be used to provide useful interpretations of experimental findings and predictions of certain properties. Yet, there is a need to further improve computational accuracy for the quantitative prediction of biomolecular interactions and to model properties that depend on the wave functions and not just the energy terms.
View Article and Find Full Text PDFTheor Chem Acc
March 2012
Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, MN 55455-0431, USA.
The explicit polarization (X-Pol) method is a self-consistent fragment-based electronic structure theory in which molecular orbitals are block-localized within fragments of a cluster, macromolecule, or condensed-phase system. To account for short-range exchange repulsion and long-range dispersion interactions, we have incorporated a pairwise, empirical potential, in the form of Lennard-Jones terms, into the X-Pol effective Hamiltonian. In the present study, the X-Pol potential is constructed using the B3LYP hybrid density functional with the 6-31G(d) basis set to treat interacting fragments, and the Lennard-Jones parameters have been optimized on a dataset consisting of 105 bimolecular complexes.
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