The quantized Hamilton dynamics methodology [O. V. Prezhdo and Y. V. Pereverzev, J. Chem. Phys. 113, 6557 (2000)] is applied to the dynamics of the Morse potential using the SU(2) ladder operators. A number of closed analytic approximations are derived in the Heisenberg representation by performing semiclassical closures and using both exact and approximate correspondence between the ladder and position-momentum variables. In particular, analytic solutions are given for the exact classical dynamics of the Morse potential as well as a second-order semiclassical approximation to the quantum dynamics. The analytic approximations are illustrated with the O-H stretch of water and a Xe-Xe dimer. The results are extended further to coupled Morse oscillators representing a linear triatomic molecule. The reported analytic expressions can be used to accelerate classical molecular dynamics simulations of systems containing Morse interactions and to capture quantum-mechanical effects.
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http://dx.doi.org/10.1063/1.3154143 | DOI Listing |
J Chem Phys
December 2024
Department of Physics and Astronomy, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada.
Complex-Langevin field-theoretic simulations (CL-FTSs) provide an approximation-free method of calculating fluctuation corrections to the self-consistent field theory (SCFT) of block copolymer melts. However, the complex fields are prone to the formation of hot spots, which causes the method to fail. This problem has been attributed to an invariance under complex translations, which allows the system to drift away from the real-valued saddle-point of SCFT.
View Article and Find Full Text PDFArch Ration Mech Anal
December 2024
Instituto de Ciencias Matemáticas, Consejo Superior de Investigaciones Científicas, 28049 Madrid, Spain.
For any (analytic) axisymmetric toroidal domain we prove that there is a locally generic set of divergence-free vector fields that are not topologically equivalent to any magnetohydrostatic (MHS) state in . Each vector field in this set is Morse-Smale on the boundary, does not admit a nonconstant first integral, and exhibits fast growth of periodic orbits; in particular this set is residual in the Newhouse domain. The key dynamical idea behind this result is that a vector field with a dense set of nondegenerate periodic orbits cannot be topologically equivalent to a generic MHS state.
View Article and Find Full Text PDFJ Mol Model
December 2024
School of Mechanical and Electrical Engineering, Lanzhou University of Technology, Lanzhou, 730050, China.
Context: This study employs molecular dynamics simulations to investigate the nanoscale tribological behavior of a single transverse grain boundary in a nickel-based polycrystalline alloy. A series of simulations were conducted using a repetitive rotational friction method to explore the mechanisms by which different grain boundary positions influence variations in wear depth, friction force, friction coefficient, dislocation, stress, and internal damage during repeated friction processes. The results reveal that the grain boundary structure enhances the strength of the nanoscale nickel-based polycrystalline alloy.
View Article and Find Full Text PDFmSphere
December 2024
Department of Chemical, Biochemical, and Environmental Engineering, University of Maryland, Baltimore County, Baltimore, Maryland, USA.
Unlabelled: This study investigates a previously unreported stress signal transduced as crosstalk between the cell wall integrity (CWI) pathway and the septation initiation network (SIN). Echinocandins, which target cell wall synthesis, are widely used to treat mycoses. Their efficacy, however, is species specific.
View Article and Find Full Text PDFJ Med Chem
December 2024
Oncology Medicinal Chemistry Worldwide Research and Development, Pfizer, Inc., 10770 Science Center Drive, La Jolla, California 92121, United States.
Hematopoietic progenitor kinase 1 (HPK1/MAP4K1) represents a high interest target for the treatment of cancer through an immune-mediated mechanism. Herein we present highlights of the drug discovery campaign within the lactam/azalactam series of inhibitors that yielded a small molecule (, PF-07265028), which was advanced to a phase 1 clinical trial (NCT05233436). Key components of the discovery effort included optimization of potency through mitigation of ligand strain as guided by the use of cocrystal structures, mitigation of ADME liabilities (plasma instability and fraction metabolism by CYP2D6), and optimization of kinase selectivity, particularly over immune-modulating kinases with high homology to HPK1.
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