To gain performance, developers often build scientific applications in procedural languages, such as C or Fortran, which unfortunately reduces flexibility. To address this imbalance, the authors present CompuCell3D, a multitiered, flexible, and scalable problem-solving environment for morphogenesis simulations that's written in C++ using object-oriented design patterns.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2695324PMC
http://dx.doi.org/10.1109/MCSE.2007.74DOI Listing

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