The cation binding of dipolar aromatics was investigated employing computational techniques. In most cases, cation binding at the pi region of the aromatic (the cation-pi interaction), which can be thought of as a cation-quadrupole interaction, is preferred over cation binding at the negative end of the dipole moment. Surprisingly, in some cases, the cation-dipole complex is not even a minimum on the potential energy surface.
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http://dx.doi.org/10.1021/jp902400h | DOI Listing |
Polymers (Basel)
January 2025
Institute of Textile Auxiliary and Ecological Dyeing Finishing, Nanjing Tech University, 30 South Puzhu Road, Nanjing 211816, China.
A simple and non-chemical binding nanofiber (-CD/PA) adsorbent was obtained by electrospinning a mixture of -cyclodextrin (-CD) and polyacrylate (PA). The cationic dyes in wastewater were removed by the host-guest inclusion complex of the -cyclodextrin and the electrostatic interaction between the polyacrylate and the dyes groups. The influence of the content of -cyclodextrin on the surface morphology and adsorption capacity of the nanofiber membrane was discussed, and the optimized adsorption capacity of nanofiber adsorption material was determined.
View Article and Find Full Text PDFInt J Mol Sci
January 2025
Department of Drug and Health Sciences, University of Catania, Viale A. Doria 6, 95125 Catania, Italy.
Precise binding free-energy predictions for ligands targeting metalloproteins, especially zinc-containing histone deacetylase (HDAC) enzymes, require specialized computational approaches due to the unique interactions at metal-binding sites. This study evaluates a docking algorithm optimized for zinc coordination to determine whether it could accurately differentiate between protonated and deprotonated states of hydroxamic acid ligands, a key functional group in HDAC inhibitors (HDACi). By systematically analyzing both protonation states, we sought to identify which state produces docking poses and binding energy estimates most closely aligned with experimental values.
View Article and Find Full Text PDFBiomolecules
January 2025
Department of Biochemistry and Molecular Biology, Mayo Clinic College of Medicine and Science, Rochester, MN 55905, USA.
(1) Background: Prostate cancer treatment efficacy is significantly influenced by androgen receptor (AR) signaling pathways. SLC22A3, a membrane transporter, has been linked to SNP rs9364554 risk loci for drug efficacy in prostate cancer. (2) Methods: We examined the location of SNP rs9364554 in the genome and utilized TCGA and other publicly available datasets to analyze the association of this SNP with transcription levels.
View Article and Find Full Text PDFInt J Biol Macromol
January 2025
Soft Matter and Molecular Biophysics Group, Department of Applied Physics and Institute of Materials (iMATUS), University of Santiago de Compostela, 15782 Santiago de Compostela, Spain.
This study investigates the physicochemical interactions between fibrinogen (Fib), a key glycoprotein in blood clotting, and a mixture of two biologically active compounds: dicloxacillin (Diclox), an antibiotic; and cetyltrimethylammonium bromide (CTAB), a cationic surfactant. Understanding these interactions is crucial for enhancing drug delivery systems and optimizing pharmaceutical formulations. Molecular docking simulations and various spectroscopic techniques, including UV-Vis, fluorescence, and circular dichroism, were employed to explore how this mixture affects the structural and functional properties of fibrinogen.
View Article and Find Full Text PDFInt J Biol Macromol
January 2025
School of Life Science, Shanxi University, Taiyuan, Shanxi Province, China. Electronic address:
Overuse of antibiotics has led to the emergence of drug-resistant bacteria and environmental problems. Antimicrobial peptides (AMPs) and silver nanoparticles (AgNPs) can potentially replace antibiotics. Therefore, it is possible to create composite nanostructures with synergistic bactericidal properties by combining AgNPs and AMPs.
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