AI Article Synopsis
- FieldML is a developing standard for modeling and exchanging descriptions of fields in software, catering to various computational techniques.
- It offers a flexible set of operators to define complex fields, including basic domains like discrete objects and coordinate systems, making it ideal for modeling complex biological materials and organ systems.
- The paper discusses FieldML's underlying concepts with an example of a finite-element field and highlights its implementations in open-source computation and visualization tools based on extensive bioengineering software development.
Article Abstract
The field modelling language FieldML is being developed as a standard for modelling and interchanging field descriptions in software, suitable for a wide range of computation techniques. It comprises a rich set of operators for defining generalized fields as functions of other fields, starting with basic domain fields including sets of discrete objects and coordinate systems. It is extensible by adding new operators and by their arbitrary combination in expressions, making it well suited for describing the inherent complexity of biological materials and organ systems. This paper describes the concepts behind FieldML, including a simple example of a spatially varying finite-element field. It outlines current implementations in established, open source computation and visualization software, both drawing on decades of bioengineering modelling software development experience.
Download full-text PDF |
Source |
|---|---|
| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2665020 | PMC |
| http://dx.doi.org/10.1098/rsta.2009.0025 | DOI Listing |
Publication Analysis
Top Keywords
Similar Publications
OpenCMISS: a multi-physics & multi-scale computational infrastructure for the VPH/Physiome project.
Prog Biophys Mol Biol
October 2011
Auckland Bioengineering Institute (ABI), The University of Auckland, New Zealand.
The VPH/Physiome Project is developing the model encoding standards CellML (cellml.org) and FieldML (fieldml.org) as well as web-accessible model repositories based on these standards (models.
View Article and Find Full Text PDFFieldML: concepts and implementation.
Philos Trans A Math Phys Eng Sci
May 2009
Auckland Bioengineering Institute, University of Auckland, Auckland 1142, New Zealand.
Article Synopsis
- FieldML is a developing standard for modeling and exchanging descriptions of fields in software, catering to various computational techniques.
- It offers a flexible set of operators to define complex fields, including basic domains like discrete objects and coordinate systems, making it ideal for modeling complex biological materials and organ systems.
- The paper discusses FieldML's underlying concepts with an example of a finite-element field and highlights its implementations in open-source computation and visualization tools based on extensive bioengineering software development.
Want AI Summaries of new PubMed Abstracts delivered to your In-box?
Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!