We propose a multistep approach for representing and classifying tree-like structures in medical images. Tree-like structures are frequently encountered in biomedical contexts; examples are the bronchial system, the vascular topology, and the breast ductal network. We use tree encoding techniques, such as the depth-first string encoding and the PrUfer encoding, to obtain a symbolic string representation of the tree's branching topology; the problem of classifying trees is then reduced to string classification. We use the tf-idf text mining technique to assign a weight of significance to each string term (i.e., tree node label). Similarity searches and k-nearest neighbor classification of the trees is performed using the tf-idf weight vectors and the cosine similarity metric. We applied our approach to characterize the ductal tree-like parenchymal structure in X-ray galactograms, in order to distinguish among different radiological findings. Experimental results demonstrate the effectiveness of the proposed approach with classification accuracy reaching up to 86%, and also indicate that our method can potentially aid in providing insight to the relationship between branching patterns and function or pathology.
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http://dx.doi.org/10.1109/TMI.2008.929102 | DOI Listing |
Nat Commun
January 2025
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona, 08003, Spain.
In a phylogeny, trustworthy reliability branch support estimates are as important as the tree itself. We show that reliability support values based on bootstrapping can be improved by combining sequence and structural information from proteins. Our approach relies on the systematic comparison of homologous intra-molecular structural distances.
View Article and Find Full Text PDFElife
January 2025
Department of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
Dendrites are crucial for receiving information into neurons. Sensory experience affects the structure of these tree-like neurites, which, it is assumed, modifies neuronal function, yet the evidence is scarce, and the mechanisms are unknown. To study whether sensory experience affects dendritic morphology, we use the ' arborized nociceptor PVD neurons, under natural mechanical stimulation induced by physical contacts between individuals.
View Article and Find Full Text PDFActa Biomater
January 2025
Research Center for Macromolecules and Biomaterials, National Institute for Materials Science, 1-1 Namiki, Tsukuba, Ibaraki 305-0044, Japan. Electronic address:
Tolerogenic dendritic cells with professional antigen presentation via major histocompatibility complex molecules, co-stimulatory molecules (CD80/86), and interleukin 10 production have attracted significant attention as cellular therapies for autoimmune, allergic, and graft-versus-host diseases. In this study, we developed a cell culture dish equipped with polycation-porphyrin-conjugate-immobilized glass (PA-HP-G) to stimulate immature murine dendritic cell (iDCs). Upon irradiation with a red light at 635 nm toward the PA-HP-G surface, singlet oxygen was generated by the immobilized porphyrins on the PA-HP-G surface.
View Article and Find Full Text PDFNeural Netw
December 2024
The State Key Laboratory of Information Engineering in Surveying, Mapping and Remote Sensing, Wuhan University, 129 Luoyu Road, Wuhan, 430079, China. Electronic address:
Modifying the structure of an existing network is a common method to further improve the performance of the network. However, modifying some layers in network often results in pre-trained weight mismatch, and fine-tune process is time-consuming and resource-inefficient. To address this issue, we propose a novel technique called Identity Model Transformation (IMT), which keep the output before and after transformation in an equal form by rigorous algebraic transformations.
View Article and Find Full Text PDFPharmaceutics
December 2024
Laboratoire de Chimie de Coordination (LCC-CNRS) 205 Route de Narbonne, CEDEX 4, 31077 Toulouse, France.
As the main pioneer in the field of dendrimers, a term that he coined in 1985 in reference to their tree-like structure, Prof. Donald A. Tomalia has inspired several generations of researchers worldwide [.
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