Allostery in the LacI/GalR family: variations on a theme.

Curr Opin Microbiol

Department of Biochemistry and Molecular Biology, The University of Kansas Medical Center, Kansas City, 66160, United States.

Published: April 2009

The lactose repressor protein (LacI) was among the very first genetic regulatory proteins discovered, and more than 1000 members of the bacterial LacI/GalR family are now identified. LacI has been the prototype for understanding how transcription is controlled using small metabolites to modulate protein association with specific DNA sites. This understanding has been greatly expanded by the study of other LacI/GalR homologues. A general picture emerges in which the conserved fold provides a scaffold for multiple types of interactions - including oligomerization, small molecule binding, and protein-protein binding - that in turn influence target DNA binding and thereby regulate mRNA production. Although many different functions have evolved from this basic scaffold, each homologue retains functional flexibility: For the same protein, different small molecules can have disparate impact on DNA binding and hence transcriptional outcome. In turn, binding to alternative DNA sequences may impact the degree of allosteric response. Thus, this family exhibits a symphony of variations by which transcriptional control is achieved.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2688824PMC
http://dx.doi.org/10.1016/j.mib.2009.01.009DOI Listing

Publication Analysis

Top Keywords

laci/galr family
8
dna binding
8
binding
5
allostery laci/galr
4
family variations
4
variations theme
4
theme lactose
4
lactose repressor
4
repressor protein
4
protein laci
4

Similar Publications

Rugged fitness landscapes minimize promiscuity in the evolution of transcriptional repressors.

Cell Syst

April 2024

Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706, USA; Department of Chemical and Biological Engineering, University of Wisconsin-Madison, Madison, WI 53706, USA. Electronic address:

Article Synopsis
  • The study explores how the function of proteins shapes their fitness landscapes, distinguishing between smooth landscapes (where small changes lead to gradual function variations) and rugged landscapes (where changes result in unpredictable function shifts).
  • Through examining 1,158 sequences from the LacI/GalR transcriptional repressor family, the research found a rugged landscape with rapid changes in specificity between closely related sequences.
  • The ruggedness of this landscape is linked to the need for the repressor to evolve a specific function while avoiding conflicting regulatory interactions, providing new insights into the evolution of genetic regulation.
View Article and Find Full Text PDF

Allosteric transcription factors (aTFs) are used in a myriad of processes throughout biology and biotechnology. aTFs have served as the workhorses for developments in synthetic biology, fundamental research, and protein manufacturing. One of the most utilized TFs is the lactose repressor (LacI).

View Article and Find Full Text PDF

Enteric pathogens with low infectious doses rely on the ability to orchestrate the expression of virulence and metabolism-associated genes in response to environmental cues for successful infection. Accordingly, the human pathogen enterohemorrhagic (EHEC) employs a complex multifaceted regulatory network to link the expression of type III secretion system (T3SS) components to nutrient availability. While phosphorylation of histidine and aspartate residues on two-component system response regulators is recognized as an integral part of bacterial signaling, the involvement of phosphotyrosine-mediated control is minimally explored in Gram-negative pathogens.

View Article and Find Full Text PDF

The short 8-10 amino acid "hinge" sequence in lactose repressor (LacI), present in other LacI/GalR family members, links DNA and inducer-binding domains. Structural studies of full-length or truncated LacI-operator DNA complexes demonstrate insertion of the dimeric helical "hinge" structure at the center of the operator sequence. This association bends the DNA ∼40° and aligns flanking semi-symmetric DNA sites for optimal contact by the N-terminal helix-turn-helix (HtH) sequences within each dimer.

View Article and Find Full Text PDF

The order Rhizobiales contains numerous agriculturally, biotechnologically, and medically important bacteria, including the rhizobia, and the genera , , and , among others. These organisms tend to be metabolically versatile, but there has been relatively little investigation into the regulation of their central carbon metabolic pathways. Here, RNA-sequencing and promoter fusion data are presented to show that the PckR protein is a key regulator of central carbon metabolism in ; during growth with gluconeogenic substrates, PckR represses expression of the complete Entner-Doudoroff glycolytic pathway and induces expression of the and gluconeogenic genes.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!