DNA Topology and Topoisomerases: Teaching a "Knotty" Subject.

Biochem Mol Biol Educ

Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232-0146.

Published: January 2008

AI Article Synopsis

  • DNA is a double-stranded helix whose topological properties, like underwinding and knotting, significantly affect key biological processes, making it a complex topic for students to grasp.
  • The article aims to simplify the concept of DNA topology for educational purposes and highlights topoisomerases, which are crucial enzymes that manage DNA's structure by creating temporary breaks in the helix to maintain stability.
  • While topoisomerases are vital for cell function and survival, their ability to cleave DNA can lead to genomic fragmentation, a characteristic that is exploited in various cancer and antibacterial treatments, but also linked to the development of specific leukemias.

Article Abstract

DNA is essentially an extremely long double-stranded rope in which the two strands are wound about one another. As a result, topological properties of the genetic material, including DNA underwinding and overwinding, knotting, and tangling, profoundly influence virtually every major nucleic acid process. Despite the importance of DNA topology, it is a conceptionally difficult subject to teach, because it requires students to visualize three-dimensional relationships. This article will familiarize the reader with the concept of DNA topology and offer practical approaches and demonstrations to teaching this "knotty" subject in the classroom. Furthermore, it will discuss topoisomerases, the enzymes that regulate the topological state of DNA in the cell. These ubiquitous enzymes perform a number of critical cellular functions by generating transient breaks in the double helix. During this catalytic event, topoisomerases maintain genomic stability by forming covalent phosphotyrosyl bonds between active site residues and the newly generated DNA termini. Topoisomerases are essential for cell survival. However, because they cleave the genetic material, these enzymes also have the potential to fragment the genome. This latter feature of topoisomerases is exploited by some of the most widely prescribed anticancer and antibacterial drugs currently in clinical use. Finally, in addition to curing cancer, topoisomerase action also has been linked to the induction of specific types of leukemia.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2643378PMC
http://dx.doi.org/10.1002/bmb.20244DOI Listing

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