A series of oligoindole foldamers 1 a-d that are highly fluorescent were prepared by using a biindole derivative as the repeating unit, and their folding and anion-binding properties were revealed by (1)H NMR and fluorescence spectroscopy. The oligoindoles exist in an extended conformation, but adopt a compact helical structure in the presence of an anion. The anion is entrapped inside the tubular cavity of the helical strand, comprising four aryl units per turn, by multiple hydrogen bonds with the indole NHs. These structural features were confirmed by (1)H NMR and fluorescence spectroscopy. When folded by anion binding, 1 b-d show characteristic downfield shifts of the NH signals and upfield shifts of the aromatic CH signals by Deltadelta=0.1-1.0 ppm. The average chemical shift for all the aromatic signals of 1 a-d is more upfield shifted as the chain lengthens, as anticipated from the degree of overlapped aromatic surfaces in the helical strand. Moreover, 1 a-d are strongly fluorescent in the absence of an anion. Upon binding an anion such as a chloride, the shorter oligoindoles 1 a and b lead to negligible change in the emission spectra, whereas the longer ones 1 c and d result in dramatic changes, that is, large hypochromic and bathochromic shifts (Deltalambda=65 and 70 nm) of the emission band, confirming the helical folding. The association constants (K(a)) between oligoindoles and tetrabutylammonium chloride strongly depend on the chain length; <1 M(-1) for 1 a, 630 M(-1) for 1 b, 1.1x10(5) M(-1) for 1 c, and 2.9x10(5) M(-1) for 1 d in 20 % (v/v) MeOH/CH(2)Cl(2) at 24+/-1 degrees C. In addition, the association constants of 1 c and 1 d with other anions such as fluoride, bromide, iodide, azide, cyanide, acetate, and nitrate are determined to be in the order of 10(3)-10(6) M(-1) under the same conditions.
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Angew Chem Int Ed Engl
January 2025
School of Chemistry, University of Bristol, Cantock's Close, Bristol, BS8 1TS, United Kingdom.
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December 2023
Center for Mechanical Excitability, The University of Chicago, Chicago, United States.
Prestin responds to transmembrane voltage fluctuations by changing its cross-sectional area, a process underlying the electromotility of outer hair cells and cochlear amplification. Prestin belongs to the SLC26 family of anion transporters yet is the only member capable of displaying electromotility. Prestin's voltage-dependent conformational changes are driven by the putative displacement of residue R399 and a set of sparse charged residues within the transmembrane domain, following the binding of a Cl anion at a conserved binding site formed by the amino termini of the TM3 and TM10 helices.
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August 2024
Department of Computational and Data Sciences, Indian Institute of Science, Bengaluru, Karnataka, India.
The 'Nest' motif plays a functional role in protein owing to its ligand binding potential aided by geometric concavity. The presence of less favored left-handed conformation (L-state) in its structure makes this concavity possible and in shaping the native chemical environment amenable to stable binding interactions. To understand the persistent appearance of L-state torsion in the Nest motif, we analyzed 0.
View Article and Find Full Text PDFBiophys Physicobiol
March 2023
Graduate School of Engineering, Osaka University, Suita, Osaka 565-0871, Japan.
Much effort has been devoted to elucidate mechanisms of amyloid fibril formation using various kinds of additives, such as salts, metals, detergents, and biopolymers. Here, we review the effects of additives with a focus on polyphosphate (polyP) on amyloid fibril formation of β-microglobulin (β2m) and α-synuclein (αSyn). PolyP, consisting of up to 1,000 phosphoanhydride bond-linked phosphate monomers, is one of the most ancient, enigmatic, and negatively charged molecules in biology.
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May 2023
Dipartimento di Chimica 'Ugo Schiff', Università di Firenze, Via della Lastruccia 3, 50019, Sesto Fiorentino, Firenze, Italy.
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