Peptide deformylase (PDF) catalyzes the removal of the N-formyl group from the N-terminus of newly synthesized polypeptides; this process is crucial for cell survival. As it is an antibacterial drug target against Xanthomonas oryzae pv. oryzae (Xoo), PDF from Xoo was cloned, expressed, purified and crystallized. Native PDF crystals diffracted to 2.7 A resolution and belonged to the hexagonal space group P6(1)22, with unit-cell parameters a = b = 59.0, c = 266.3 A. One monomer is present in the asymmetric unit, with a corresponding crystal volume per protein weight of 3.50 A(3) Da(-1) and a solvent content of 64.9%.
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http://dx.doi.org/10.1107/S1744309108031631 | DOI Listing |
BMC Microbiol
November 2024
Botany and Microbiology Department, Faculty of Science, Helwan University, Helwan, Egypt.
Proc Natl Acad Sci U S A
November 2024
Department of Biology, University of Rochester, Rochester, NY 14627.
Within a cell, protein-bound methionines can be chemically or enzymatically oxidized, and subsequently reduced by methionine sulfoxide reductases (Msrs). Methionine oxidation can result in structural damage or be the basis of functional regulation of enzymes. In addition to participating in redox reactions, methionines play an important role as the initiator residue of translated proteins where they are commonly modified at their α-amine group by formylation or acetylation.
View Article and Find Full Text PDFOrg Biomol Chem
August 2024
Department of Pharmacy, Banasthali Vidyapith, Banasthali, India.
A base-promoted palladium-catalyzed cascade reaction is described to access trifluoromethylated dipyridodiazepinone derivatives in an aqueous system (1,4-dioxane-HO). This methodology uses simple chemicals, has a broad substrate scope, is waste minimized (-factor = 0.3-0.
View Article and Find Full Text PDFFront Chem
June 2024
Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research, Kolkata, West Bengal, India.
In this study, 1,4-benzothiazine-based bisamide derivatives, a new class of antibacterial agents targeting bacterial peptide deformylase (PDF), were designed and synthesized to combat infection. Molecular modeling of the designed molecules showed better docking scores compared to the natural product actinonin. Bioactivity assessment identified two derivatives with promising antibacterial activity .
View Article and Find Full Text PDFArch Biochem Biophys
August 2024
Department of Biological Science & Engineering, MANIT, Bhopal, India. Electronic address:
Streptococcus oralis an opportunistic bacterium has been reported to be involved in various blood borne infections like subacute bacterial endocarditis, septicemia, bacterial meningitis and in some cases dental caries too. Among various targets the peptide deformylase, of S.oralis appears to be most potent druggable target as it is involved in protein synthesis is opted for the current study.
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