Graphs have been widely used to model relationships among data. For large graphs, excessive edge crossings make the display visually cluttered and thus difficult to explore. In this paper, we propose a novel geometry-based edge-clustering framework that can group edges into bundles to reduce the overall edge crossings. Our method uses a control mesh to guide the edge-clustering process; edge bundles can be formed by forcing all edges to pass through some control points on the mesh. The control mesh can be generated at different levels of detail either manually or automatically based on underlying graph patterns. Users can further interact with the edge-clustering results through several advanced visualization techniques such as color and opacity enhancement. Compared with other edge-clustering methods, our approach is intuitive, flexible, and efficient. The experiments on some large graphs demonstrate the effectiveness of our method.
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http://dx.doi.org/10.1109/TVCG.2008.135 | DOI Listing |
Front Chem
January 2025
Department of Mathematics and Statistics, Hazara University, Mansehra, Pakistan.
This study investigates the significance of single-walled (SWCNTs) and multi-walled (MWCNTs) carbon nanotubes with a convectional fluid (water) over a vertical cone under the influences of chemical reaction, magnetic field, thermal radiation and saturated porous media. The impact of heat sources is also examined. Based on the flow assumptions, the fundamental flow equations are modeled as partial differential equations (PDEs).
View Article and Find Full Text PDFThe neural networks offer iteration capability for low-density parity-check (LDPC) decoding with superior performance at transmission. However, to cope with increasing code length and rate, the complexity of the neural network increases significantly. This is due to the large amount of feature extraction required to maintain the error correction capability.
View Article and Find Full Text PDFBMC Bioinformatics
January 2025
Mathematics and Computer Science Department, University of the Balearic Islands, Ctra Valldemossa, Km 7.5, Palma, 07122, Balearic Islands, Spain.
Background: MetaDAG is a web-based tool developed to address challenges posed by big data from omics technologies, particularly in metabolic network reconstruction and analysis. The tool is capable of constructing metabolic networks for specific organisms, sets of organisms, reactions, enzymes, or KEGG Orthology (KO) identifiers. By retrieving data from the KEGG database, MetaDAG helps users visualize and analyze complex metabolic interactions efficiently.
View Article and Find Full Text PDFNPJ Digit Med
January 2025
State Key Laboratory of Chemical Oncogenomics, Key Laboratory of Chemical Genomics, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, Shenzhen, 518055, China.
Accurately predicting binding affinities between drugs and targets is crucial for drug discovery but remains challenging due to the complexity of modeling interactions between small drug and large targets. This study proposes DMFF-DTA, a dual-modality neural network model integrates sequence and graph structure information from drugs and proteins for drug-target affinity prediction. The model introduces a binding site-focused graph construction approach to extract binding information, enabling more balanced and efficient modeling of drug-target interactions.
View Article and Find Full Text PDFJ Chem Inf Model
January 2025
Center for Engineering Concepts Development, Department of Mechanical Engineering, University of Maryland, College Park, Maryland 20742, United States.
In 2020, nearly 3 million scientific and engineering papers were published worldwide (White, K. Publications Output: U.S.
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