The hyperthermophilic nature of the metallo-oxidase from Aquifex aeolicus.

Biochim Biophys Acta

Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, Av. da República, 2781-901 Oeiras, Portugal.

Published: January 2009

The stability of the Aquifex aeolicus multicopper oxidase (McoA) was studied by spectroscopy, calorimetry and chromatography to understand its thermophilic nature. The enzyme is hyperthermostable as deconvolution of the differential scanning calorimetry trace shows that thermal unfolding is characterized by temperature values at the mid-point of 105, 110 and 114 degrees C. Chemical denaturation revealed however a very low stability at room temperature (2.8 kcal/mol) because copper bleaching/depletion occur before the unfolding of the tertiary structure and McoA is highly prone to aggregate. Indeed, unfolding kinetics measured with the stopped-flow technique quantified the stabilizing effect of copper on McoA (1.5 kcal/mol) and revealed quite an uncommon observation further confirmed by light scattering and gel filtration chromatography: McoA aggregates in the presence of guanidinium hydrochloride, i.e., under unfolding conditions. The aggregation process results from the accumulation of a quasi-native state of McoA that binds to ANS and is the main determinant of the stability curve of McoA. Kinetic partitioning between aggregation and unfolding leads to a very low heat capacity change and determines a flat dependence of stability on temperature.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bbapap.2008.09.006DOI Listing

Publication Analysis

Top Keywords

aquifex aeolicus
8
mcoa
6
unfolding
5
hyperthermophilic nature
4
nature metallo-oxidase
4
metallo-oxidase aquifex
4
stability
4
aeolicus stability
4
stability aquifex
4
aeolicus multicopper
4

Similar Publications

Structure-function analysis of tRNA tA-catalysis, assembly, and thermostability of Aquifex aeolicus TsaDB tetramer in complex with TsaE.

J Biol Chem

November 2024

School of Life Sciences, Key Laboratory of Cell Activities and Stress Adaptation of the Ministry of Education, Lanzhou University, Lanzhou, China. Electronic address:

Article Synopsis
  • The modification of tRNA at position 37 (tA) is crucial for ensuring accurate protein synthesis and is produced through the actions of specific enzymes (TsaC, TsaD, TsaB, and TsaE) using L-threonine and ATP in bacteria.
  • This study reconstituted the biosynthesis of tA from the bacterium Aquifex aeolicus and examined the structural characteristics of the TsaDB enzyme complex, finding that it can bind both TsaE and tRNA, with the binding being influenced by specific protein sequences.
  • The research showed that TsaE enhances the catalytic action of TsaDB, leading to the release of tRNA
View Article and Find Full Text PDF

Deoxyuridine triphosphate pyrophosphatase (DUT) suppresses incorporation of uracil into genomic DNA during replication. Thermostable DUTs from hyperthermophilic archaea such as Thermococcus pacificus enhance PCR amplification by preventing misincorporation of dUTP generated by spontaneous deamination of dCTP. However, it is necessary to elucidate whether DUTs do not cause dNTP imbalances during PCR by unwanted side activity.

View Article and Find Full Text PDF

Methods that identify protein-protein interactions are essential for understanding molecular mechanisms controlling biological systems. Proximity-dependent labeling has proven to be a valuable method for revealing protein-protein interaction networks in living cells. A mutant form of the biotin protein ligase enzyme from Aquifex aeolicus (BioID2) underpins this methodology by producing biotin that is attached to proteins that enter proximity to it.

View Article and Find Full Text PDF

Assessing RNA atomistic force fields via energy landscape explorations in implicit solvent.

Biophys Rev

June 2024

Laboratoire Biologie Functionnelle Et Adaptative, CNRS UMR 8251, Inserm ERL U1133, Université Paris Cité, 35 Rue Hélène Brion, Paris, France.

Unlabelled: Predicting the structure and dynamics of RNA molecules still proves challenging because of the relative scarcity of experimental RNA structures on which to train models and the very sensitive nature of RNA towards its environment. In the last decade, several atomistic force fields specifically designed for RNA have been proposed and are commonly used for simulations. However, it is not necessarily clear which force field is the most suitable for a given RNA molecule.

View Article and Find Full Text PDF
Article Synopsis
  • - The oligonucleotide/oligosaccharide-binding (OB)-fold is crucial for recognizing various biomolecules and plays significant roles in processes like genome maintenance and protein synthesis.
  • - A study reveals the 2.6 Å co-crystal structure of a specific bacterial protein (Trbp111) bound to tRNA, showing it recognizes tRNAs mainly by their 3' ends, particularly the conserved 3' CA dinucleotide.
  • - The research highlights a new understanding of how ancient protein folds recognize tRNA, which may enhance our knowledge of tRNA-related functions like aminoacylation and localization.
View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!