The effect of beta-ring rotation on the structures and vibrational spectroscopic characteristics of beta-carotene, including infrared (IR) intensities and Raman activities, is analyzed using density functional theory. Two stable isomers having Ci symmetry are obtained. The reversion of bond lengths is ascribed to the hyperconjugation effect. The natural bond orbital (NBO) charge analysis suggests that the NBO charges of C5 can be used to estimate the degree of pi-electron delocalization. These structural variations are used to analyze and assign the vibrational spectra. It is concluded that (a) the similar rotational angle dependencies of nu1 and nu2 frequencies justify the contribution of C=C stretch vibrations to the nu2 mode and explain the same conjugation length dependencies of nu1 and nu2 frequencies in polyenes, (b) the nu1 mode can be assigned to the C=C stretching in the central part of polyene chain, whereas beta-rings play an important role in nu2 and IR1 bands, especially for the all-trans isomer, and (c) the transition dipole moment of the calculated IR1 absorption band is relevant to the conjugation degree and the crossing angle between the eigenvectors of the polyene chain and the C5=C6 stretching vibration. This theoretical analysis, together with our previous Raman spectral experiments, suggests that the C6-C7 bond is easier to be twisted than other parts of beta-carotene molecule and so provides an insight into the structures of carotenoids and the properties of binding sites in carotenoproteins.
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http://dx.doi.org/10.1021/jp802024v | DOI Listing |
Photosynth Res
April 2023
Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia, 119991.
Our analysis of the X-ray crystal structure of canthaxanthin (CAN) showed that its ketolated β-ionone rings can adopt two energetically equal, but structurally distinct puckers. Quantum chemistry calculations revealed that the potential energy surface of the β-ionone ring rotation over the plane of the conjugated π-system in carotenoids depends on the pucker state of the β-ring. Considering different pucker states and β-ionone ring rotation, we found six separate local minima on the potential energy surface defining the geometry of the keto-β-ionone ring-two cis and one trans orientation for each of two pucker states.
View Article and Find Full Text PDFJ Phys Chem A
September 2015
Faculdade de Física, Universidade Federal do Pará , Belém, Pará 66075-110, Brazil.
In this study, we studied the stability of an all-trans-β-carotene single crystal using Raman spectroscopy with line excitation at 632.8 nm, in the temperature range 20–300 K. The Raman spectra exhibit clear modifications in the spectral range of the lattice and internal vibrational modes.
View Article and Find Full Text PDFArch Biochem Biophys
January 2010
Florida International University, Department of Chemistry and Biochemistry, Miami, FL 33199, USA.
Conformation affects a carotenoid's ability to bind selectively to proteins. We calculated adiabatic energy profiles for rotating the ring end-groups around the C6C7 bond and for flexing of the ring with respect to the polyene chain. The choice of computational methods is important.
View Article and Find Full Text PDFJ Phys Chem A
October 2008
Center for Condensed Matter Science and Technology, Department of Physics, Harbin Institute of Technology, Harbin 150001, China.
The effect of beta-ring rotation on the structures and vibrational spectroscopic characteristics of beta-carotene, including infrared (IR) intensities and Raman activities, is analyzed using density functional theory. Two stable isomers having Ci symmetry are obtained. The reversion of bond lengths is ascribed to the hyperconjugation effect.
View Article and Find Full Text PDFBiophys J
December 2004
Department of Biochemistry and Molecular Biology, The University of Texas-Houston Medical School, Houston, Texas 77030, USA.
Proteasome-dependent proteolysis is essential for a number of key cellular processes and requires a sophisticated biogenesis pathway to function. Here, we have arrested the assembly process in its dynamic progression at the short-lived 16S state. Structural analysis of the 16S proteasome precursor intermediates by electron microscopy, and single particle analysis reveals major conformational changes in the structure of the beta-ring in comparison with one-half of the 20S proteasome.
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