Frequency-dependent selection remains the most commonly invoked heuristic explanation for the maintenance of genetic variation. For polymorphism to exist, new alleles must be both generated and maintained in the population. Here we use a construction approach to model frequency-dependent selection with mutation under the pairwise interaction model. The pairwise interaction model is a general model of frequency-dependent selection at the genotypic level. We find that frequency-dependent selection is able to generate a large number of alleles at a single locus. The construction process generates multiallelic polymorphisms with a wide range of allele-frequency distributions and genotypic fitness relationships. Levels of polymorphism and mean fitness are uncoupled, so constructed polymorphisms remain permanently invasible to new mutants; thus the model never settles down to an equilibrium state. Analysis of constructed fitness sets reveals signatures of heterozygote advantage and positive frequency dependence.
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http://dx.doi.org/10.1534/genetics.108.088880 | DOI Listing |
bioRxiv
December 2024
Department of Biology, Penn State University, University Park, PA 16802, USA.
Mitochondria, cellular powerhouses, harbor DNA (mtDNA) inherited from the mothers. MtDNA mutations can cause diseases, yet whether they increase with age in human germline cells-oocytes-remains understudied. Here, using highly accurate duplex sequencing of full-length mtDNA, we detected mutations in single oocytes, blood, and saliva in women between 20 and 42 years of age.
View Article and Find Full Text PDFProc Natl Acad Sci U S A
December 2024
Complexity Science and Evolution Unit, Okinawa Institute of Science and Technology Graduate University (OIST), Tancha, Onna, Kunigami, Okinawa 904-0495, Japan.
The epidemiology and evolution of diseases unfold in populations that are rarely homogeneous. Instead, hosts infected by pathogens often form metapopulations, in which local populations connected by the movement of hosts experience different demographic and epidemiological conditions. Here, we develop a general theory of the evolution of pathogens in heterogeneous metapopulations.
View Article and Find Full Text PDFLab Chip
December 2024
College of Engineering and Applied Sciences, Nanjing University, Jiangsu 210093, China.
Acoustic waves provide an effective method for object manipulation in microfluidics, often requiring high-frequency ultrasound in the megahertz range when directly handling microsized objects, which can be costly. Micro-air-bubbles in water offer a solution toward low-cost technologies using low-frequency acoustic waves. Owing to their high compressibility and low elastic modulus, these bubbles can exhibit significant expansion and contraction in response to even kilohertz acoustic waves, leading to resonances with frequencies determined and tuned by air-bubble size.
View Article and Find Full Text PDFMethodsX
December 2024
Institute for Mathematical Research, Universiti Putra Malaysia, 43400 UPM, Serdang, Malaysia.
An efficient trigonometrical-fitted two-derivative multistep collocation (TF-TDMC) method using Legendre polynomials up to order five as the basis functions, has been developed for solving second-order ordinary differential equations with oscillatory solution effectively. Interpolation method of approximated power series and collocation technique of its second and third derivative are implemented in the construction of the methods. Two-derivative multistep collocation methods are developed in predictor and corrector form with varying collocation and interpolation points.
View Article and Find Full Text PDFProc Natl Acad Sci U S A
December 2024
Program in Applied Mathematics & Computational Science, University of Pennsylvania, Philadelphia, PA 19104.
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