A toolkit for analysing large-scale plant small RNA datasets.

Bioinformatics

School of Computing Sciences, School of Biological Sciences, University of East Anglia, Norwich NR47TJ, UK.

Published: October 2008

Unlabelled: Recent developments in high-throughput sequencing technologies have generated considerable demand for tools to analyse large datasets of small RNA sequences. Here, we describe a suite of web-based tools for processing plant small RNA datasets. Our tools can be used to identify micro RNAs and their targets, compare expression levels in sRNA loci, and find putative trans-acting siRNA loci.

Availability: The tools are freely available for use at http://srna-tools.cmp.uea.ac.uk.

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Source
http://dx.doi.org/10.1093/bioinformatics/btn428DOI Listing

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