Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules.

Phys Rev Lett

Department of Physics, Laboratory of Atomic and Solid State Physics, Cornell University, Ithaca, New York 14853, USA.

Published: April 2008

The response of single DNA molecules to externally applied forces and torques was directly measured using an angular optical trap. Upon overwinding, DNA buckled abruptly as revealed by a sharp extension drop followed by a torque plateau. When the DNA was held at the buckling transition, its extension hopped rapidly between two distinct states. Furthermore, the initial plectonemic loop absorbed approximately twice as much extension as was absorbed into the plectoneme upon each additional turn. The observed extension change after buckling and the postbuckling torque support a recent DNA elasticity model.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3019760PMC
http://dx.doi.org/10.1103/PhysRevLett.100.148301DOI Listing

Publication Analysis

Top Keywords

buckling transition
8
dna molecules
8
dna
5
abrupt buckling
4
transition observed
4
observed plectoneme
4
plectoneme formation
4
formation individual
4
individual dna
4
molecules response
4

Similar Publications

Carbon nanorings (CNRs) serve as an ideal quantum system for novel electronic and magnetic properties. Although extensive theoretical studies utilizing molecular dynamics (MD) simulations have investigated the formation and structural characteristics of CNRs, systematically analyzing their properties across various toric sizes remains challenging due to the inherent complexity of this system. In this study, we introduce a novel finite element method, the Chebyshev-Ritz method, as an alternative approach to investigating the structural properties of CNRs.

View Article and Find Full Text PDF

Based on density functional theory calculations, we propose a new pathway toward compounds featuring flat [AgF] layers which mimic [CuO] layers in high-temperature oxocuprate superconductor precursors. Calculations predict the dynamic (phonon) and energetic stability of the new phases over diverse substrates. For some compounds with ferro orbital ordering, we find a gigantic intrasheet superexchange constant of up to -211 meV (DFT+) and -256 meV (SCAN), calculated for hypothetical (CsMgF)KAgF intergrowth.

View Article and Find Full Text PDF

Advancements in aspiration catheter tip design for thrombectomy: a comprehensive patent review.

Front Med Technol

November 2024

Department of BioMechanical Engineering, Faculty of Mechanical Engineering, Delft University of Technology, Delft, Netherlands.

Thrombus removal from the human body is facilitated through the utilization of aspiration catheters during minimally invasive thrombectomy procedures, where a pressure differential guides the targeted tissue through a flexible tubular medical instrument. In this paper, we present a patent analysis of thrombectomy aspiration catheter tip designs sourced from the EspaceNet database. Our findings reveal that enhancing the operability of aspiration catheters can be achieved by improving ease of positioning or suction capacity, whether through active or passive means.

View Article and Find Full Text PDF

Buckled-layer KMnO: a novel cathode for potassium-ion batteries.

Chem Sci

December 2024

School of Materials Science and Engineering, Key Laboratory of Advanced Ceramics and Machining Technology (Ministry of Education), Tianjin Key Laboratory of Composite and Functional Materials, Tianjin University Tianjin 300072 China

A novel buckled-layer KMnO cathode was synthesized, featuring P2-oxygen stacking and P3-K sites. The presence of two independent manganese sites significantly influences the charge distribution and diffusion pathways of potassium ions during the charge and discharge processes, resulting in exceptional electrochemical performance. A reversible capacity of 105 mA h g at 100 mA g and remarkable rate capability of 70 mA h g at 1 A g were achieved, surpassing those of most previously reported layered transition metal oxide cathodes.

View Article and Find Full Text PDF

Anomalous Thermal Transport in Compressed Carbon Phases.

Phys Rev Lett

November 2024

Walker Department of Mechanical Engineering, The University of Texas at Austin, Austin, Texas 78712, USA and Texas Materials Institute, The University of Texas at Austin, Austin, Texas 78712, USA.

Carbon materials display intriguing physical properties, including superconductivity and highly anisotropic thermal conductivity found in graphene. Compressive strain can induce structural and bonding transitions in carbon materials and create new carbon phases, but their interplay with thermal conductivity remains largely unexplored. We investigated the in situ high-pressure thermal conductivity of compressed graphitic phases using picosecond transient thermoreflectance and first-principles calculations.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!