N-acetyl-neuraminic acid (Neu5Ac, 2) was prepared enzymatically containing single sites of (13)C-enrichment at C1, C2, and C3. Aqueous solutions of the three (13)C isotopomers were studied by (1)H and (13)C NMR spectroscopy at p(2)H 2 and pH 8 to obtain J(CH) and J(CC) values involving the labeled carbons. Experimental studies were complemented by DFT calculations of the same set of J-couplings in protonated and ionized structural mimics of 2 to determine how well theoretical predictions match the experimental findings in saccharides bearing ionizable functionality. Results show that: (a) (2)J(C2,H3ax/eq) values in 2 depend on anomeric configuration, thus complementing (3)J(C1,H3ax/eq) behavior, (b) J(CH) and J(CC) values involving C2 depend on anomeric configuration, the C1-C2 bond torsion, and solution pH, and (c) long-range (4)J(C2,H7) is sensitive to glycerol side-chain conformation. Intraring J(HH) and most (2)J(CH), (3)J(CH), (2)J(CC), and (3)J(CC) involving C1-C3 of 2 appear largely unaffected by the ionization state of the carboxyl group. In vacuo and solvated DFT calculations of geminal and vicinal J(CH) and J(CC) values are similar and reproduce the experimental data well, but better agreement with experiment was observed for (1)J(C1,C2) in the solvated calculations. The present work provides new information for future treatments of trans-glycoside couplings involving Neu5Ac residues by (a) providing new standard values of intraring J(CC) for coupling pathways that mimic those for trans-glycoside J(CC), (b) identifying potential effects of solution pH on trans-glycoside couplings inferred through the behavior of related intraring couplings, and (c) providing specific guidelines for more reliable DFT predictions of J(CH) and J(CC) values in ionizable saccharides.
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http://dx.doi.org/10.1021/jo702204x | DOI Listing |
Biochemistry
February 2019
Complex Carbohydrate Research Center , University of Georgia, Athens , Georgia 30602 United States.
A new experimental method, MA' AT analysis, has been applied to investigate the conformational properties of O-glycosidic linkages in several biologically important mannose-containing di- and oligosaccharides. Methyl α-d-mannopyranosyl-(1→2)-α-d-mannopyranoside (2), methyl α-d-mannopyranosyl-(1→3)-α-d-mannopyranoside (3), and methyl α-d-mannopyranosyl-(1→3)-β-d-mannopyranoside (4) were prepared with selective C-enrichment to enable the measurement of NMR scalar couplings across their internal O-glycosidic linkages. Density functional theory (DFT) was used to parameterize equations for J and J values in 2-4 that are sensitive to phi (ϕ) and psi (ψ).
View Article and Find Full Text PDFMagn Reson Chem
October 2018
Structure Elucidation Group, Process and Analytical Research and Development, Merck & Co., Inc., 126 East Lincoln Avenue, Rahway, NJ, 07065, USA.
1,n-ADEQUATE is a powerful NMR technique for elucidating the structure of proton-deficient small molecules that can help establish the carbon skeleton of a given molecule by providing long-range three-bond C─ C correlations. Care must be taken when using the experiment to identify the simultaneous presence of one-bond C─ C correlations that are not filtered out, unlike the HMBC experiment that has a low-pass J-filter to filter J responses out. Dual-optimized, inverted J 1,n-ADEQUATE is an improved variant of the experiment that affords broadband inversion of direct responses, obviating the need to take additional steps to identify these correlations.
View Article and Find Full Text PDFMagn Reson Chem
November 2017
Department of Chemistry, University of Central Florida, 4111 Libra Drive, Orlando, FL, 32816, USA.
This study explores the feasibility of using a combination of experimental and theoretical 1-bond C─ C scalar couplings ( J ) to establish structure in organic compounds, including unknowns. Historically, J and J studies have emphasized 2 and 3-bond couplings, yet J couplings exhibit significantly larger variations. Moreover, recent improvements in experimental measurement and data processing methods have made J data more available.
View Article and Find Full Text PDFJ Phys Chem B
April 2017
Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556-5670, United States.
Twelve disaccharides containing β-(1→4) linkages and displaying systematic structural variations in the vicinity of these linkages were selectively labeled with C to facilitate measurements of multiple NMR spin-spin (scalar; J) coupling constants (J and J values) across their O-glycosidic linkages. Ensembles of spin-couplings (J, J, J) sensitive to the two linkage torsion angles, phi (ϕ) and psi (ψ), were analyzed by using parametrized equations obtained from density functional theory (DFT) calculations, Fredholm theory, and circular statistics to calculate experiment-based rotamer populations for ϕ and ψ in each disaccharide. With the statistical program MA'AT, torsion angles ϕ and ψ were modeled as a single von Mises distribution, which yielded two parameters, the mean position and the circular standard deviation (CSD) for each angle.
View Article and Find Full Text PDFJ Org Chem
February 2017
Department of Chemistry and Physics, Fayetteville State University, Fayetteville, North Carolina 28301, United States.
An ensemble of J, J, and J values was measured in aqueous solutions of methyl α- and β-d-idohexopyranosides containing selective C-enrichment at various carbons. By comparing these J-couplings to those reported previously in the α- and β-d-idohexopyranoses, methyl glycosidation was found to affect ring conformational equilibria, with the percentages of C forms based on J analysis as follows: α-d-idopyranose, ∼18%; methyl α-d-idopyranoside, ∼42%; methyl β-d-idopyranoside, ∼74%; β-d-idopyranose, 82%. J and J values were analyzed with assistance from theoretical values obtained from density functional theory (DFT) calculations.
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