AI Article Synopsis

  • A study explores the interactions in five peptides containing aromatic residues by analyzing the importance of dispersion forces in their structure.
  • The research compares multiple computational methods, including various density functional theory (DFT) approaches, to determine which effectively accounts for London dispersion interactions.
  • Findings indicate that the M06-2X and TPSS-D functionals perform best in modeling these peptides, while traditional DFT methods lacking dispersion correction, like B3LYP, show consistent shortcomings.

Article Abstract

A detailed quantum chemical study on five peptides (WG, WGG, FGG, GGF and GFA) containing the residues phenylalanyl (F), glycyl (G), tryptophyl (W) and alanyl (A) -- where F and W are of aromatic character -- is presented. When investigating isolated small peptides, the dispersion interaction is the dominant attractive force in the peptide backbone-aromatic side chain intramolecular interaction. Consequently, an accurate theoretical study of these systems requires the use of a methodology covering properly the London dispersion forces. For this reason we have assessed the performance of the MP2, SCS-MP2, MP3, TPSS-D, PBE-D, M06-2X, BH&H, TPSS, B3LYP, tight-binding DFT-D methods and ff99 empirical force field compared to CCSD(T)/complete basis set (CBS) limit benchmark data. All the DFT techniques with a '-D' symbol have been augmented by empirical dispersion energy while the M06-2X functional was parameterized to cover the London dispersion energy. For the systems here studied we have concluded that the use of the ff99 force field is not recommended mainly due to problems concerning the assignment of reliable atomic charges. Tight-binding DFT-D is efficient as a screening tool providing reliable geometries. Among the DFT functionals, the M06-2X and TPSS-D show the best performance what is explained by the fact that both procedures cover the dispersion energy. The B3LYP and TPSS functionals-not covering this energy-fail systematically. Both, electronic energies and geometries obtained by means of the wave-function theory methods compare satisfactorily with the CCSD(T)/CBS benchmark data.

Download full-text PDF

Source
http://dx.doi.org/10.1039/b719294kDOI Listing

Publication Analysis

Top Keywords

force field
12
dispersion energy
12
isolated small
8
small peptides
8
side chain
8
theory methods
8
empirical force
8
london dispersion
8
tight-binding dft-d
8
benchmark data
8

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!