The emergence of an RNA world requires among other processes the non-enzymatic, template-directed replication of genetic polymers such as RNA or related nucleic acids, possibly catalyzed by metal-ions. The absence of uridilate derivative polymerization on adenine containing templates has been the main issue preventing an efficient template-directed RNA polymerization. We report here the investigation of template-directed RNA polymerization in the eutectic phase in water-ice. In particular, it was found that activated uridilate monomers in the presence of metal-ion catalysts could efficiently elongate RNA hairpins whose 5'-overhangs served as the templating sequence. The same applies for every other pyrimidine and purine nucleobase. Moreover, the initial elongation rates were always higher in the presence of a template complementary to the nucleotide than in systems without proper base-pairing opportunities. These results suggest that a template-directed RNA polymerization catalyzed by metal-ions could be carried out under eutectic phase in water-ice conditions.
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http://dx.doi.org/10.1016/j.jinorgbio.2008.01.026 | DOI Listing |
Phys Life Rev
December 2024
Research Center for Advanced Science and Technology, University of Tokyo, Komaba 4-6-1, Meguro-ku, Tokyo 153-8904, Japan.
Enormous progress has been made in the last 20 years since the publication of our review [1] in this journal on transport and traffic phenomena in biology. In this brief article we present a glimpse of the major advances during this period. First, we present similarities and differences between collective intracellular transport of a single micron-size cargo by multiple molecular motors and that of a cargo particle by a team of ants on the basis of the common principle of load-sharing.
View Article and Find Full Text PDFNucleic Acids Res
December 2024
Department of Chemistry, 5735 South Ellis Avenue, The University of Chicago, Chicago, IL 60637, USA.
The RNA World hypothesis posits that RNA was the molecule of both heredity and function during the emergence of life. This hypothesis implies that RNA templates can be copied, and ultimately replicated, without the catalytic aid of evolved enzymes. A major problem with nonenzymatic template-directed polymerization has been the very poor copying of sequences containing rA and rU.
View Article and Find Full Text PDFBiomolecules
August 2024
Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR 72205-7199, USA.
Recombination hotspot-activating DNA sites (e.g., , , ) and their binding proteins (e.
View Article and Find Full Text PDFMicroPubl Biol
July 2024
Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas, United States.
Discrete DNA sites position meiotic recombination at hotspots. We sought to create four different, 15 bp long, candidate regulatory DNA sites within the reporter gene. Each effort employed a fission yeast-optimized CRISPR system (SpEDIT), optimal guide RNA, and one of four homologous recombination templates with 10 to 15 bp substitutions.
View Article and Find Full Text PDFJ Biotechnol
September 2024
Department of Biochemistry and Molecular Biology, College of Basic Medical Sciences, Naval Medical University, 200433, People's Republic of China. Electronic address:
Cyclic nucleic acids are biologically stable against nucleic acid exonucleases due to the absence of 5' and 3' termini. Studies of cyclic nucleic acids mainly focus on cyclic single-stranded nucleic acids. Cyclic single-stranded nucleic acids are further divided into circular RNA (circRNA) and circular single-stranded DNA (cssDNA).
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