Solution conditions conducive to protein crystallization are identified mainly in an empirical manner using screening methods. Measurements of a dilute solution thermodynamic parameter, the osmotic second virial coefficient, have been shown to be useful in guiding this search, yet the measurement of this parameter remains difficult. In this work, a nanoparticle-based assay, self-interaction nanoparticle spectroscopy, is presented as an efficient alternative. The method involves adsorbing proteins on the surface of gold nanoparticles and adding the protein/gold conjugates to solutions of interest for crystallization. The optical properties of gold colloid, including macroscopic ones such as color, are sensitive to the interparticle separation distance, and they are demonstrated to correlate with the value of the second virial coefficient for BSA and ovalbumin. Serendipitously, the conditions that correspond to second virial coefficient values within the thermodynamic region ideal for protein crystallization lead to the maximum change in color of the gold suspensions. Given the remarkable efficiency of this method, it holds significant potential to aid in the crystallization of proteins that have not been crystallized previously. Moreover, this method may find utility in the analysis of weak homo- and heterotypic interactions involved in other biological applications, including preventing protein aggregation and formulating therapeutic proteins.
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http://dx.doi.org/10.1021/ja077624q | DOI Listing |
J Phys Chem Lett
December 2024
Discovery Pharmaceutical Sciences, Merck & Co., Inc., West Point, Pennsylvania 19486, United States.
Nonspecific protein-protein interactions (PPIs) are key to understanding the behavior of proteins in solutions. However, experimentally measuring anisotropic PPIs as a function of orientation and distance has been challenging. Here, we propose to measure a new parameter, the generalized second virial coefficient, (), to address this challenge.
View Article and Find Full Text PDFJ Chem Phys
December 2024
Institute of Condensed Matter Physics, Department of Physics, Technical University of Darmstadt, Hochschulstraße 8, D-64289 Darmstadt, Germany.
We are used to measuring temperature with a thermometer, and we know from everyday life that different types of thermometers measure the same temperature. This experience can be based on equilibrium thermodynamics, which explains the equivalence of different possibilities to define temperature. In contrast, for systems out of equilibrium such as active matter, measurements performed with different thermometers can generally lead to different temperature values.
View Article and Find Full Text PDFACS Nano
December 2024
Department of Chemistry, James Franck Institute, and Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States.
Electrostatically stabilized nanocrystals (NCs) and, in particular, quantum dots (QDs) hold promise for forming strongly coupled superlattices due to their compact and electronically conductive surface ligands. However, studies of the colloidal dispersion and interparticle interactions of electrostatically stabilized sub-10 nm NCs have been limited, hindering the optimization of their colloidal stability and self-assembly. In this study, we employed small-angle X-ray scattering (SAXS) experiments to investigate the interparticle interactions and arrangement of PbS QDs with thiostannate ligands (PbS-SnS) in polar solvents.
View Article and Find Full Text PDFPhys Rev E
October 2024
Departamento de Física Teórica de la Materia Condensada, Instituto de Física de la Materia Condensada (IFIMAC), Instituto de Ciencias de Materiales "Nicolás Cabrera," Universidad Autónoma de Madrid, Ciudad Universitaria de Cantoblanco, E-28049 Madrid, Spain.
This work further investigates an aspect of the phase behavior of hard circular arcs whose phase diagram has been recently calculated by Monte Carlo numerical simulations: the non-nematicity of the filamentary phase that hard minor circular arcs form. Both second-virial density-functional theory and further Monte Carlo numerical simulations find that the positional one-particle density function undulates in the direction transverse to the axes of the filaments while further Monte Carlo numerical simulations find that the mobility of the hard minor circular arcs across the filaments occurs via a mechanism reminiscent of the mechanism of diffusion in a smectic phase: the filamentary phase is not a {"modulated" ["splay(-bend)"]} nematic phase.
View Article and Find Full Text PDFPhysica A
June 2024
Department of Chemistry, University of Illinois Chicago, Chicago, IL 60607, USA.
We present a method, FMAPS(q), for calculating the structure factor, , of a protein solution, by extending our ast Fourier transform-based odeling of tomistic rotein-protein interactions (FMAP) approach. The interaction energy consists of steric, nonpolar attractive, and electrostatic terms that are additive among all pairs of atoms between two protein molecules. In the present version, we invoke the free-rotation approximation, such that the structure factor is given by the Fourier transform of the protein center-center distribution function .
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