Tissue tagging using magnetic resonance (MR) imaging has enabled quantitative noninvasive analysis of motion and deformation in vivo. One method for MR tissue tagging is Spatial Modulation of Magnetization (SPAMM). Manual detection and tracking of tissue tags by visual inspection remains a time-consuming and tedious process. The authors have developed an interactively guided semi-automated method of detecting and tracking tag intersections in cardiac MR images. A template matching approach combined with a novel adaptation of active contour modeling permits rapid analysis of MR images. The authors have validated their technique using MR SPAMM images of a silicone gel phantom with controlled deformations. Average discrepancy between theoretically predicted and semi-automatically selected tag intersections was 0.30 mm+/-0.17 [mean+/-SD, NS (P<0.05)]. Cardiac SPAMM images of normal volunteers and diseased patients also have been evaluated using the authors' technique.
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http://dx.doi.org/10.1109/42.414606 | DOI Listing |
Small Methods
January 2025
Department of Pathology, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou, Guangdong, 510080, China.
Accurately defining cell boundaries for spatial transcriptomics is technically challenging. The current major approaches are nuclear staining or mathematical inference, which either exclude the cytoplasm or determine a hypothetical boundary. Here, a new method is introduced for defining cell boundaries: labeling cell membranes using genetically coded fluorescent proteins, which allows precise indexing of sequencing spots and transcripts within cells on sections.
View Article and Find Full Text PDFDiagnostics (Basel)
January 2025
Department of Electrocardiology, Institute of Cardiology, Faculty of Medicine, Jagiellonian University Medical College, 31-008 Kraków, Poland.
Cardiac magnetic resonance (CMR) allows for analysis of cardiac function and myocardial tissue characterization. Increased left ventricular mass (LVM) is an independent predictor of cardiovascular events; however, the diagnosis of left ventricular hypertrophy and its prognostic value strongly depend on the LVM indexation method. Evaluation of the quantity and distribution of late gadolinium enhancement assists in clinical decisions on diagnosis, cardiovascular assessment, and interventions, including the placement of cardiac implantable electronic devices and the choice of an optimal procedural approach.
View Article and Find Full Text PDFRSC Chem Biol
January 2025
Department of Pharmaceutical Sciences, University of California Irvine California 92697 USA
The architecture of cells and the tissue they form within multicellular organisms are highly complex and dynamic. Cells optimize their function within tissue microenvironments by expressing specific subsets of RNAs. Advances in cell tagging methods enable spatial understanding of RNA expression when merged with transcriptomics.
View Article and Find Full Text PDFACS Chem Biol
January 2025
Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, United States.
We present versatile tools for intersectional optical and chemical tagging of live cells. Photocaged tetrazines serve as "photo-click" adapters between recognition groups on the cell surface and diverse chemical payloads. We describe two new functionalized photocaged tetrazine structures which add a light-gating step to three common cell-targeting chemical methods: HaloTag/chloroalkane labeling, nonspecific primary amine labeling, and antibody labeling.
View Article and Find Full Text PDFiScience
January 2025
Department of Internal Medicine, Carver College of Medicine, University of Iowa, Iowa City, IA, USA.
We and others previously found that a misannotated long noncoding RNA encodes for a conserved mitochondrial transmembrane microprotein named Mitoregulin (Mtln). Beyond an established role for Mtln in lipid metabolism, Mtln has been shown to broadly influence mitochondria, boosting respiratory efficiency and Ca retention capacity, while lowering ROS, yet the underlying mechanisms remain unresolved. Prior studies have identified possible Mtln protein interaction partners; however, a lack of consensus persists, and no claims have been made about Mtln's structure.
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