The mechanistic conundrum is commonly posed by the intrinsic structural disconnect between a bimolecular (reactive) intermediate that is fleetingly detected spectroscopically in solution versus that rigorously defined by isolation and X-ray crystallography. We resolve this ambiguity by the combined experimental and theoretical application of the solvent media probe to the transient (1:1) precursor complex in the simplest chemical reaction involving direct adiabatic electron transfer (ET) among various donor/acceptor pairs. Of particular help in our resolution of such an important ET problem is the characterization of the bimolecular precursor complex as Robin-Day class II (localized) or class III (delocalized) from either the solvent-dependent or the solvent-independent response of the diagnostic intervalence absorption bands for the quantitative evaluation of the electronic coupling elements. The magnitudes of these intracomplex bindings are confirmed by theoretical (ab initio and DFT) computations that derive from X-ray structures and Marcus-Hush theories. Most importantly, the experimental solvent-induced ET barriers evaluated from the intervalence absorption bands are also quantitatively verified by the calculated outer-shell reorganization energies to establish unambiguously the intimate interconnection between the loosely bound bimolecular intermediate identified concurrently in solution and in the solid state.
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http://dx.doi.org/10.1021/ja076591b | DOI Listing |
Nat Chem Biol
January 2025
Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, France.
Iron-sulfur clusters are essential metallocofactors synthesized by multiprotein machineries via an unclear multistep process. Here we report a step-by-step dissection of the [2Fe-2S] cluster assembly process by the Escherichia coli iron-sulfur cluster (ISC) assembly machinery using an in vitro reconstituted system and a combination of biochemical and spectroscopic techniques. We show that this process is initiated by iron binding to the scaffold protein IscU, which triggers persulfide insertion by the cysteine desulfurase IscS upon the formation of a complex with IscU.
View Article and Find Full Text PDFSci Rep
January 2025
Shenyang Institute of Computing Technology, Chinese Academy of Sciences, Shenyang, 110168, Liaoning, China.
The problem of ground-level ozone (O) pollution has become a global environmental challenge with far-reaching impacts on public health and ecosystems. Effective control of ozone pollution still faces complex challenges from factors such as complex precursor interactions, variable meteorological conditions and atmospheric chemical processes. To address this problem, a convolutional neural network (CNN) model combining the improved particle swarm optimization (IPSO) algorithm and SHAP analysis, called SHAP-IPSO-CNN, is developed in this study, aiming to reveal the key factors affecting ground-level ozone pollution and their interaction mechanisms.
View Article and Find Full Text PDFJ Am Chem Soc
January 2025
Department of Chemistry, Queen's University, Kingston, ON K7L 3N6, Canada.
Tambjamines are complex bipyrrole-containing natural products that possess promising bioactive properties. Although is known to produce both cyclic tambjamine MYP1 and the linear precursor (YP1), the biosynthetic machinery used to catalyze the site-selective oxidative carbocyclization at the unactivated 1° carbon of YP1 has remained unclear. Here, we demonstrate that a three-component Rieske system consisting of an oxygenase (TamC) and two redox partner proteins is responsible for this unprecedented activity on YP1 and potentially, a non-native substrate (BE-18591).
View Article and Find Full Text PDFCurr Top Dev Biol
January 2025
Department of Pharmacology, School of Medicine, Case Western Reserve University, Cleveland, OH, United States. Electronic address:
Animals perceiving light through visual pigments have evolved pathways for absorbing, transporting, and metabolizing the precursors essential for synthesis of their retinylidene chromophores. Over the past decades, our understanding of this metabolism has grown significantly. Through genetic manipulation, researchers gained insights into the metabolic complexity of the pathways mediating the flow of chromophore precursors throughout the body, and their enrichment within the eyes.
View Article and Find Full Text PDFInt J Biol Macromol
January 2025
Department of Chemistry, Biology and Biotechnology, University of Perugia, via Elce di Sotto 8, 06123 Perugia, Italy. Electronic address:
Lignocellulosic biomass, rich in cellulose, hemicellulose, and lignin, represents a promising renewable resource. However, lignin, a complex polyphenolic material, remains underutilized despite its surplus production. This review focuses on the conversion of lignin into macromonomers for polymer production.
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