The local interpolating moving least-squares (IMLS) method for constructing potential energy surfaces is investigated. The method retains the advantageous features of the IMLS approach in that the ab initio derivatives are not required and high degree polynomials can be used to provide accurate fits, while at the same time it is much more efficient than the standard IMLS approach because the least-squares solutions need to be calculated only once at the data points. Issues related to the implementation of the local IMLS method are investigated and the accuracy is assessed using HOOH as a test case. It is shown that the local IMLS method is at the same level of accuracy as the standard IMLS method. In addition, the scaling of the method is found to be a power law as a function of number of data points N, N(-q). The results suggest that when fitting only to the energy values for a d-dimensional system by using a Qth degree polynomial the power law exponent q approximately Qd when the energy range fitted is large (e.g., E<100 kcalmol for HOOH), and q>Qd when the energy range fitted is smaller (E<30 kcalmol) and the density of data points is higher. This study demonstrates that the local IMLS method provides an efficient and accurate means for constructing potential energy surfaces.
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http://dx.doi.org/10.1063/1.2805084 | DOI Listing |
Background: Microsporidia MB (MB) is a naturally occurring symbiont of Anopheles and has recently been identified as having a potential to inhibit the transmission of Plasmodium in mosquitoes. MB intensity is high in mosquito gonads, with no fitness consequences for the mosquito, and is linked to horizontal (sexual) and vertical (transovarial) transmission from one mosquito to another. Maximising MB intensity and transmission is important for maintaining heavily infected mosquito colonies for experiments and ultimately for mosquito releases.
View Article and Find Full Text PDFHeliyon
June 2024
Department of Microbiology, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
The increasing emergence of as the primary causative agent of otitis externa has been noted; however, detailed information regarding the molecular characteristics of these strains in Iran remains scarce. The current study aims to investigate both genotypic and phenotypic attributes of strains implicated in ear infections. In the present work, we analyzed 60 strains isolated from cases of otitis externa over a period of 45 months.
View Article and Find Full Text PDFNat Methods
July 2023
Institute of Computational Biology, Helmholtz Center Munich, Munich, Germany.
Highly multiplexed imaging holds enormous promise for understanding how spatial context shapes the activity of the genome and its products at multiple length scales. Here, we introduce a deep learning framework called CAMPA (Conditional Autoencoder for Multiplexed Pixel Analysis), which uses a conditional variational autoencoder to learn representations of molecular pixel profiles that are consistent across heterogeneous cell populations and experimental perturbations. Clustering these pixel-level representations identifies consistent subcellular landmarks, which can be quantitatively compared in terms of their size, shape, molecular composition and relative spatial organization.
View Article and Find Full Text PDFGenome Biol
March 2023
Department of Molecular Life Sciences, University of Zurich, Zurich, Switzerland.
BMC Pregnancy Childbirth
January 2023
Department of Biology, Qaemshahr Branch, Islamic Azad University, Qaemshahr, Iran.
Background: The antibiotic resistance of genital tract colonizing Streptococcus agalactiae in pregnant women is increasing. We aimed to determine the antibiotic resistance genes of different clonal types of this bacterium in pregnant women.
Methods: Four hundred twenty non-repeated vaginal and rectal specimens were collected from pregnant women and were transferred to the laboratory using Todd Hewitt Broth.
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