Labile hemiaminal intermediates are stabilized by binding in a deep cavitand with an introverted aldehyde functionality. The aldehyde is attached to the cavitand via an anthracene spacer that rotates rapidly about the cavitand rim. The half-lives of these hemiaminals vary from 30 min to over 100 h at ambient temperature, due to hydrogen bonding with the organized peptide-like framework at the cavitand rim. The intermediates are sufficiently long-lived to allow study by 2D NMR techniques requiring many hours of acquisition time. Mechanistic analysis of the dehydration step shows first-order kinetics. The analogous "extroverted" reaction was also performed, where the addition took place outside the cavitand, displaying standard steady-state kinetics; no hemiaminal was observed. The cavitand shows strong selectivity based not on binding affinity but upon the rate of the product-forming step. A 10:1 ratio of product imines was obtained, while the initial binding ratio was 1:1. The cavitand acts as a mimic of enzymes in that it uses weak binding forces to stabilize reactive intermediates and isolates them from the medium. The synthetic environment allows direct detection and analysis of the intermediates, as opposed to natural systems that must be analyzed indirectly.
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http://dx.doi.org/10.1021/ja0759343 | DOI Listing |
Molecules
December 2024
College of Materials Science and Technology, Nanjing University of Aeronautics and Astronautics, Nanjing 211106, China.
The advancement of synthetic host-guest chemistry has played a pivotal role in exploring and quantifying weak non-covalent interactions, unraveling the intricacies of molecular recognition in both chemical and biological systems. Macrocycles, particularly calix[4]resorcinarene-based cavitands, have demonstrated significant utility in receptor design, facilitating the creation of intricately organized architectures. Within the realm of macrocycles, these cavitands stand out as privileged scaffolds owing to their synthetic adaptability, excellent topological structures, and unique recognition properties.
View Article and Find Full Text PDFJ Org Chem
December 2024
Ecole polytechnique de Bruxelles, Engineering of Molecular NanoSystems, Université libre de Bruxelles (ULB), Avenue F. D. Roosevelt 50, CP165/64, B-1050 Brussels, Belgium.
Many bioactive molecules contain primary ammonium groups, generating significant interest in developing selective receptors for ammonium ions. A promising strategy involves the use of polyaromatic cavitands to achieve size and shape selectivity through their cavity. However, designing effective receptors for ammonium ions in aqueous media is challenging due to the competitive nature of water.
View Article and Find Full Text PDFJ Am Chem Soc
December 2024
Department of Chemistry, University of California─Riverside, Riverside, California 92521, United States.
A synergistic combination of cationic styrylpyridinium dyes and water-soluble deep cavitand hosts can recognize phosphorylated peptides with both site- and state-selectivity. Two mechanisms of interaction are dominant: either the cationic dye interacts with Trp residues in the peptide or the host:dye pair forms a heteroternary complex with the peptide, driven by both strong dye-peptide and cavitand-peptide binding ( values up to 4 μM). The presence of multiple recognition mechanisms results in varying fluorescence responses dependent on the phosphorylation state and position, eliminating the need for covalent modification of the peptide target.
View Article and Find Full Text PDFJ Org Chem
December 2024
College of Chemistry and Chemical Engineering, Key Laboratory of Hunan Province for Chemical Power Source, Central South University, Changsha 410083, P. R. China.
Environmentally stable novel flexible bisperylene resorcin[4]arene molecular switch cavitand B and the corresponding rigid cavitand A were synthesized and a single crystal was obtained. Spectroscopic analysis revealed the formation of an excimer of perylene within the cavitand. The presence of flexible chains in cavitand B confers a high degree of environmental stability, rendering its fluorescence unaffected by external factors such as pH and temperature variations.
View Article and Find Full Text PDFChemistry
December 2024
Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
Herein, we describe the confinement of a N-Heterocyclic Carbene (NHC) organocatalyst in the cavity of cyclodextrins (CDs). These confined organocatalysts allow the formylation of amines through CO hydrosilylation. The presence of the cavity of the CDs leads to substrate-selectivity between amines in competition reactions.
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