Acetate kinase, a member of the acetate and sugar kinase/Hsc 70/actin (ASKHA) structural superfamily, catalyzes the reversible transfer of the gamma-phosphoryl group from ATP to acetate, yielding ADP and acetyl phosphate. A catalytic mechanism for the enzyme from Methanosarcina thermophila has been proposed on the basis of the crystal structure and kinetic analyses of amino acid replacement variants. The Gln43Trp variant was generated to further investigate the catalytic mechanism via changes in fluorescence. The dissociation constants for ADP.Mg2+ and ATP.Mg2+ ligands were determined for the Gln43Trp variant and double variants generated by replacing Arg241 and Arg91 with Ala and Lys. The dissociation constants and kinetic analyses indicated roles for the arginines in transition state stabilization for catalysis but not in nucleotide binding. The results also provide the first experimental evidence for domain motion and evidence that catalysis does not occur as two independent active sites of the homodimer but the active site activities are coordinated in a half-the-sites manner.
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http://dx.doi.org/10.1021/bi701292a | DOI Listing |
J Basic Microbiol
December 2024
Department of Bioinformatics, Industrial Systems Biology Lab, School of Life Sciences, Bharathidasan University, Tiruchirappalli, India.
Mol Cells
January 2025
School of Life Sciences, GIST, Gwangju 61005, Republic of Korea. Electronic address:
J Environ Manage
November 2024
Energy and Environmental Sustainability for Megacities (E2S2) Phase II, Campus for Research Excellence and Technological Enterprise (CREATE), 1 Create Way, Singapore, 138602, Singapore; Department of Chemical & Biomolecular Engineering, NUS, Singapore. Electronic address:
Proc Natl Acad Sci U S A
October 2024
Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Approximately two-thirds of the estimated one-billion metric tons of methane produced annually by methanogens is derived from the cleavage of acetate. Acetate is broken down by a Ni-Fe-S-containing A-cluster within the enzyme acetyl-CoA synthase (ACS) to carbon monoxide (CO) and a methyl group (CH). The methyl group ultimately forms the greenhouse gas methane, whereas CO is converted to the greenhouse gas carbon dioxide (CO) by a Ni-Fe-S-containing C-cluster within the enzyme carbon monoxide dehydrogenase (CODH).
View Article and Find Full Text PDFAppl Environ Microbiol
February 2024
Institute of New Energy and Low-carbon Technology, Sichuan University, Chengdu, Sichuan, China.
Acetate is a major intermediate in the anaerobic digestion of organic waste to produce CH. In methanogenic systems, acetate degradation is carried out by either acetoclastic methanogenesis or syntrophic degradation by acetate oxidizers and hydrogenotrophic methanogens. Due to challenges in the isolation of syntrophic acetate-oxidizing bacteria (SAOB), the diversity and metabolism of SAOB and the mechanisms of their interactions with methanogenic partners are not fully characterized.
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