We propose hybrid automata (HA) as a unifying framework for computational models of excitable cells. HA, which combine discrete transition graphs with continuous dynamics, can be naturally used to obtain a piecewise, possibly linear, approximation of a nonlinear excitable-cell model. We first show how HA can be used to efficiently capture the action-potential morphology--as well as reproduce typical excitable-cell characteristics such as refractoriness and restitution--of the dynamic Luo-Rudy model of a guinea-pig ventricular myocyte. We then recast two well-known computational models, Biktashev's and Fenton-Karma, as HA without any loss of expressiveness. Given that HA possess an intuitive graphical representation and are supported by a rich mathematical theory and numerous analysis tools, we argue that they are well positioned as a computational model for biological processes.
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http://dx.doi.org/10.1109/IEMBS.2006.259294 | DOI Listing |
R Soc Open Sci
October 2024
University of Adolfo Ibáñez, Faculty of Engineering and Science, Santiago, Chile.
In the article, we aim to understand the responses of living organisms, exemplified by mycelium, to external stimuli through the lens of a Turing machine with an oracle (oTM). To facilitate our exploration, we show that a variant of an oTM is a cellular automaton with an oracle, which aptly captures the intricate behaviours observed in organisms such as fungi, shedding light on their dynamic interactions with their environment. This interaction reveals forms of reflection that can be interpreted as a minimum volume of consciousness.
View Article and Find Full Text PDFPLoS One
October 2024
Artificial Intelligence & Data Analytics Lab, CCIS Prince Sultan University, Riyadh, Kingdom of Saudi Arabia.
Purpose: Using computer-aided design (CAD) systems, this research endeavors to enhance breast cancer segmentation by addressing data insufficiency and data complexity during model training. As perceived by computer vision models, the inherent symmetry and complexity of mammography images make segmentation difficult. The objective is to optimize the precision and effectiveness of medical imaging.
View Article and Find Full Text PDFAnalyst
October 2024
College of Chemistry and Chemical Engineering, Chemical Synthesis and Pollution Control Key Laboratory of Sichuan Province, China West Normal University, Nanchong, Sichuan 637002, China.
Detecting multiple targets in complex cellular and biological environments yields more reliable results than single-label assays. Here, we introduced an electrochemical biosensor equipped with computing functions, acting as a smart automaton to enable computing-based detection. By defining the logic combinations of miR-21 and miR-122 as detection patterns, we proposed the corresponding AND and OR detection automata.
View Article and Find Full Text PDFJ Environ Manage
August 2024
National Institute of Hydrology, North Eastern Regional Centre, Guwahati, Assam, India 781006.
The current study focuses on analyzing the impacts of climate change and land use/land cover (LULC) changes on sediment yield in the Puthimari basin, an Eastern Himalayan sub-watershed of the Brahmaputra, using a hybrid SWAT-ANN model approach. The analysis was meticulously segmented into three distinct time spans: 2025-2049, 2050-2074, and 2075-2099. This innovative method integrates insights from multiple climate models under two Representative Concentration Pathways (RCP4.
View Article and Find Full Text PDFSci Rep
May 2024
Environmental Science Department, Faculty of Natural Resources and Environmental Studies, University of Birjand, Birjand, South Khorasan Province, Iran.
Temporal and spatial changes in land cover in wetland ecosystems indicate the severity of degradation. Understanding such processes in the past, present, and future might be necessary for managing any type of development plan. Therefore, this research has monitored and analyzed the Hoor Al-Azim International Wetland to determine the orientation of its changes in various future scenarios.
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