Using dilatometry and small-angle X-ray diffraction, we have studied under bulk conditions the structural changes and elastic response of dioleoyl phosphatidylcholine bilayers to alamethicin. With increasing peptide concentration, we found a progressive thinning of the membrane. However, in contrast to previously published reports, this thinning exhibits exponential behavior. Furthermore, an increase in alamethicin content resulted in an increased lateral area per lipid and a swelling of the multibilayers which can be attributed to a decrease in the bilayer's bending rigidity by approximately 50%. At the same time, hydration and van der Waals forces remained unaffected by the presence of the peptide. Interestingly, all elastic and structural parameters followed the same exponential form found for the membrane thickness, implying a common underlying mechanism for all of these structural parameters. Our results can be understood by introducing an additional entropy term into the free-energy description of peptide incorporation, a term previously not considered. As a result, we have been able to reconcile recent controversies regarding the effect of peptides on membrane thinning.
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http://dx.doi.org/10.1021/la701586c | DOI Listing |
Nat Commun
August 2024
Department of Chemistry, King's College London, London, UK.
Membrane active peptides are known to porate lipid bilayers, but their exact permeabilization mechanism and the structure of the nanoaggregates they form in membranes have often been difficult to determine experimentally. For many sequences at lower peptide concentrations, transient leakage is observed in experiments, suggesting the existence of transient pores. For two well-know peptides, alamethicin and melittin, we show here that molecular mechanics simulations i) can directly distinguish equilibrium poration and non-equilibrium transient leakage processes, and ii) can be used to observe the detailed pore structures and mechanism of permeabilization in both cases.
View Article and Find Full Text PDFInt J Mol Sci
February 2024
Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY 10065, USA.
Perturbations in bilayer material properties (thickness, lipid intrinsic curvature and elastic moduli) modulate the free energy difference between different membrane protein conformations, thereby leading to changes in the conformational preferences of bilayer-spanning proteins. To further explore the relative importance of curvature and elasticity in determining the changes in bilayer properties that underlie the modulation of channel function, we investigated how the micelle-forming amphiphiles Triton X-100, reduced Triton X-100 and the H lipid phase promoter capsaicin modulate the function of alamethicin and gramicidin channels. Whether the amphiphile-induced changes in intrinsic curvature were negative or positive, amphiphile addition increased gramicidin channel appearance rates and lifetimes and stabilized the higher conductance states in alamethicin channels.
View Article and Find Full Text PDFLife (Basel)
November 2023
Institute of Biochemistry, Biological Research Centre, Temesvári krt. 62, H-6726 Szeged, Hungary.
We previously reported on a novel peptaibol, named Tripleurin XIIc (TPN), an 18-residue long sequence produced by the fungus . We elucidated its 3D structure via classical and accelerated molecular dynamics simulation (aMD) methods and reported the folding dynamics of TPN in water and chloroform solvents. Peptaibols, in general, are insoluble in water, as they are amphipathic and may prefer hydrophobic environments like transmembrane regions.
View Article and Find Full Text PDFInt J Mol Sci
August 2023
Department of Chemical Sciences, University of Padova, 35131 Padova, Italy.
Peptaibols are proteolysis-resistant, membrane-active peptides. Their remarkably stable helical 3D-structures are key for their bioactivity. They can insert themselves into the lipid bilayer as barrel staves, or lay on its surface like carpets, depending on both their length and the thickness of the lipid bilayer.
View Article and Find Full Text PDFACS Appl Mater Interfaces
July 2023
Department of Physics, Alexandru I. Cuza University, 700506 Iasi, Romania.
Nanopores offer highly sensitive, low-cost, and single-molecule sensing capabilities, and the societal impact of this approach is best captured by the advent of nanopore-based DNA detection and sequencing technologies, which extract genomic information without amplification. To address a critical difficulty plaguing such undertakings involving especially protein-based nanopores isolated in lipid bilayers, namely, the formation of a stable, long-lasting single nanopore, we pioneer herein an approach for generating functional nanostructures enabling small single-stranded DNA (ssDNA) detection. We designed a dynamic hybrid construct by appending extramembrane peptide nucleic acid (PNA) segments to the C-terminus of modified ion channel-forming alamethicin monomers.
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