The genes belonging to Pumilio gene family of the fission yeast Schizosaccharomyces pombe (S. pombe) were compared with genome information of the several fungi and their functions have been inferred using public-access databases disclosed on the internet websites. The Pumilio-family genes are conserved from yeast to man and have been considered to suppress the expression of other genes by binding their specific target messenger RNAs. In S. pombe genome, nine genes belonging to Pumilio gene family were found and were clustered into four groups by homology of their amino acid sequences. Each gene has been analyzed to search 'close orthologue' in the genomes of Saccharomyces cerevisiae, Candida parapsilosis, Aspergillus fumigatus, Phytophthora infestans, Pneumocystis carinii and Neurospora crassa, using protein-protein blast P search. Consequently, we found several genes belonging to Pumilio gene family in the genomes of Saccharomyces cerevisiae, Candida parapsilosis, and Neurospora crassa. Evolution and function of these genes can be expected from the analysis based on the molecular phylogenies.
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New Phytol
January 2025
Instituto de Investigaciones Forestales y Agropecuarias Bariloche, Instituto Nacional de Tecnología Agropecuaria, Estación Experimental Bariloche - Consejo Nacional de Investigaciones Científicas y Técnicas (INTA EEA Bariloche-CONICET), San Carlos de Bariloche, Río Negro, R8403DVZ, Argentina.
Plant survival in a warmer world requires the timely adjustment of biological processes to cyclical changes in the new environment. Circadian oscillators have been proposed to contribute to thermal adaptation and plasticity. However, the influence of temperature on circadian clock performance and its impact on plant behaviour in natural ecosystems are not well-understood.
View Article and Find Full Text PDFNucleic Acids Res
November 2024
Department of Immunology and Regenerative Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.
RNA binding proteins orchestrate the post-transcriptional fate of RNA molecules, but the principles of their action remain poorly understood. Pumilio (PUM) proteins bind 3' UTRs of mRNAs and lead to mRNA decay. To comprehensively map the determinants of recognition of sequences by PUM proteins in cells and to study the binding outcomes, we developed a massively parallel RNA assay that profiled thousands of PUM-binding sites in cells undergoing various perturbations or RNA immunoprecipitation.
View Article and Find Full Text PDFPLoS Biol
October 2024
Department of Molecular Genetics, Department of Cancer Biology and Genetics, Center for RNA Biology, Ohio State University, Columbus, Ohio, United States of America.
The translational repressor Nanos (Nos) regulates a single target, maternal hunchback (hb) mRNA, to govern abdominal segmentation in the early Drosophila embryo. Nos is recruited to sites in the 3' UTR of hb mRNA in collaboration with the sequence-specific RNA-binding protein Pumilio (Pum); on its own, Nos has no binding specificity. Nos is expressed at other stages of development, but very few mRNA targets that might mediate its action at these stages have been described.
View Article and Find Full Text PDFAndrology
October 2024
State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing, Jiangsu, China.
Gene
January 2025
Laboratory for Human Immunology (Single Cell Genomics), WPI Immunology Frontier Research Center, Osaka University, Japan; Center for Infectious Disease Education and Research (CiDER), OsakaUniversity, Osaka, Japan; Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Japan; Institute for Open and Transdisciplinary Research Initiatives, OsakaUniversity, Osaka, Japan. Electronic address:
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