Quantitative structure-retention relationship (QSRR) models have been successfully developed for the prediction of the retention factor (log k) in the biopartitioning micellar chromatography (BMC) of 66 organic pollutants. Heuristic method (HM) and radial basis function neural networks (RBFNN) were utilized to construct the linear and non-linear QSRR models, respectively. The optimal QSRR model was developed based on a 6-17-1 radial basis function neural network architecture using molecular descriptors calculated from molecular structure alone. The RBFNN model gave a correlation coefficient (R2) of 0.8464 and root-mean-square error (RMSE) of 0.1925 for the test set. This paper provided a useful model for the predicting the log k of other organic compounds when experiment data are unknown.
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http://dx.doi.org/10.1016/j.aca.2007.07.016 | DOI Listing |
J Chromatogr A
December 2024
Synthetic Molecule Pharmaceutical Science, gRED, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, United States. Electronic address:
Quantitative structure retention relation (QSRR) is an active field of research, primarily focused on predicting chromatography retention time (Rt) based on molecular structures of an input analyte on a single or limited number of reversed-phase HPLC (RP-HPLC) columns. However, in the pharmaceutical chemistry manufacturing and controls (CMC) settings, single-column QSRR models are often insufficient. It is important to translate retention time across different HPLC methods, specifically different stationary phases (SP) and mobile phases (MP), to guide the HPLC method development, and to bridge organic impurity profiles across different development phases and laboratories.
View Article and Find Full Text PDFADMET DMPK
May 2024
Department of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Belgrade, Vojvode Stepe 450, 11000 Belgrade, Serbia.
Background And Purpose: The ligands of the imidazoline and α-adrenergic receptors are mainly imidazoline and guanidine derivatives, known as centrally-acting antihypertensives and compounds with potential use in various neurological disorders. The extent of their ionisation has a major influence on their behaviour in the different analytical systems. The main objective of this work was to compare the mechanism of chromatographic retention and electrophoretic mobility under acidic, neutral and basic conditions.
View Article and Find Full Text PDFChemosphere
November 2024
Centre for Urban Sustainability and Resilience, Department of Civil, Environmental and Geomatic Engineering, University College London, London WC1E6BT, UK.
Anal Chim Acta
November 2024
State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao, China. Electronic address:
Background: N-acylethanolamines (NAEs) are a class of naturally occurring bioactive lipids that play crucial roles in various physiological processes, particularly exhibiting neuroprotective and anti-inflammatory properties. However, the comprehensive profiling of endogenous NAEs in complex biological matrices is challenging due to their low abundance, structural similarity and the limited availability of commercial standards. Here, we propose an integrated strategy for comprehensive profiling of NAEs that combines chemical derivatization and a three-dimensional (3D) prediction model based on quantitative structure-retention time relationship (QSRR) using liquid chromatography coupled with high-resolution tandem mass spectrometry (LC-HRMS).
View Article and Find Full Text PDFJ Chromatogr A
November 2024
Tongji School of Pharmacy, Huazhong University of Science and Technology, Wuhan 430030, China. Electronic address:
Natural bile acids, a class of steroids with a valeric acid side chain at the C-17 position, present significant challenges in separation and analysis due to structural similarities, isomerism, and large polarity differences. Therefore, advanced analytical methods are essential for the accurate identification and quantification of bile acids. This study conducted a comprehensive qualitative analysis of bile acids by integrating liquid chromatography-tandem mass spectrometry (LC-MS/MS), hydrogen-deuterium exchange tandem mass spectrometry (HDX-MS/MS), and quantitative structure-retention relationship (QSRR) methods.
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