Synchronization among neurons is critical for many processes in the nervous system, ranging from the processing of sensory information to the onset of pathological conditions such as epilepsy. Here, we study synchronization in an array of neurons, each modeled by a set of nonlinear ordinary differential equations. We find that an array of 20x20 coupled neurons undergoes a series of alternating low and high synchronization states, as measured by phase-locking and frequency entrainment, as the coupling constant is tuned. The role of long-range connections in inducing "small-world networks" has recently been of great interest in many physical and biological problems. Since long-range connections do exist in the brain, we investigated the role of such connections in our neural array. Introducing a biologically realistic percentage of long-range connections has no significant effect on synchronization. We find that it is rather the type of coupling and the total number of connections that determine the synchronization state of the array. We also show that some coupling conditions can lead to frustration in the system, resulting from an inability to simultaneously satisfy conflicting phase requirements. This frustration leads to a drift in the overall behavior of the network, which may offer an explanation for transitions between different types of neural oscillations observed experimentally.
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http://dx.doi.org/10.1103/PhysRevE.76.011910 | DOI Listing |
Nat Commun
January 2025
University of Strasbourg and CNRS, CESQ and ISIS (UMR 7006), aQCess, 67000, Strasbourg, France.
High-rate quantum error correcting (QEC) codes with moderate overheads in qubit number and control complexity are highly desirable for achieving fault-tolerant quantum computing. Recently, quantum error correction has experienced significant progress both in code development and experimental realizations, with neutral atom qubit architecture rapidly establishing itself as a leading platform in the field. Scalable quantum computing will require processing with QEC codes that have low qubit overhead and large error suppression, and while such codes do exist, they involve a degree of non-locality that has yet to be integrated into experimental platforms.
View Article and Find Full Text PDFNat Commun
January 2025
MRC Laboratory of Medical Sciences, London, UK.
Gene enhancers often form long-range contacts with promoters, but it remains unclear if the activity of enhancers and their chromosomal contacts are mediated by the same DNA sequences and recruited factors. Here, we study the effects of expression quantitative trait loci (eQTLs) on enhancer activity and promoter contacts in primary monocytes isolated from 34 male individuals. Using eQTL-Capture Hi-C and a Bayesian approach considering both intra- and inter-individual variation, we initially detect 19 eQTLs associated with enhancer-eGene promoter contacts, most of which also associate with enhancer accessibility and activity.
View Article and Find Full Text PDFNutrients
January 2025
Department of Computer Engineering, Inje University, Gimhae 50834, Republic of Korea.
Background: Food image recognition, a crucial step in computational gastronomy, has diverse applications across nutritional platforms. Convolutional neural networks (CNNs) are widely used for this task due to their ability to capture hierarchical features. However, they struggle with long-range dependencies and global feature extraction, which are vital in distinguishing visually similar foods or images where the context of the whole dish is crucial, thus necessitating transformer architecture.
View Article and Find Full Text PDFInt J Mol Sci
January 2025
Micron School of Materials Science and Engineering, Boise State University, Boise, ID 83725, USA.
We incorporated Espaloma forcefield parameterization into MoSDeF tools for performing molecular dynamics simulations of organic molecules with HOOMD-Blue. We compared equilibrium morphologies predicted for perylene and poly-3-hexylthiophene (P3HT) with the ESP-UA forcefield in the present work against prior work using the OPLS-UA forcefield. We found that, after resolving the chemical ambiguities in molecular topologies, ESP-UA is similar to GAFF.
View Article and Find Full Text PDFJ Struct Biol
January 2025
Shenzhen Bay Laboratory, Shenzhen 518132, China; Lingang Laboratory, Shanghai 200032, China. Electronic address:
Mitochondria are double membrane-bound organelles essential for generating energy in eukaryotic cells. Mitochondria can be readily visualized in 3D using Volume Electron Microscopy (vEM), and accurate image segmentation is vital for quantitative analysis of mitochondrial morphology and function. To address the challenge of segmenting small mitochondrial compartments in vEM images, we propose an automated mitochondrial segmentation method called GCTransNet.
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