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SePaCS--a web-based application for classification of seroreactivity profiles. | LitMetric

SePaCS--a web-based application for classification of seroreactivity profiles.

Nucleic Acids Res

Center for Bioinformatics, Saarland University, Building E1 1, 66041 Saarbrücken, Germany.

Published: July 2007

AI Article Synopsis

Article Abstract

Immunogenic antigen sets possess high potential for minimally invasive disease detection and monitoring. For various diseases, including cancer, appropriate antigen sets have already been detected in blood sera of patients. Typically, a large number of sera from diseased and unaffected persons is screened for the antigens of interest. Sophisticated statistical learning approaches are trained on the resulting data set to classify sera as either tumor or normal sera. We developed a web-based application, called 'Seroreactivity Profile Classification Service' (SePaCS) that enables clinical groups to carry out analyzes of training sets and predictions of unclassified seroreactivity profiles with minimal effort. SePaCS provides a broad range of classification methods: four versions of a Naïve Bayes Classifier, Support Vector Machines with a radial basis function kernel, Linear Discriminant Analysis, and Diagonal Discriminant Analysis. The computed results are summarized in a PDF file. We demonstrate the functionality of SePaCS exemplarily for meningioma, a generally benign intracranial tumor. As a second example, we evaluated SePaCS on glioma, a malignant brain tumor. SePaCS is freely available at http://www.bioinf.uni-sb.de/sepacs.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933220PMC
http://dx.doi.org/10.1093/nar/gkm262DOI Listing

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