The genome sequence of Roseovarius sp. strain 217 indicated that many pathway enzymes found in other organisms for the degradation of taurine are represented, but that a novel, apparently energy-dependent pathway is involved in the conversion of acetyl phosphate to acetyl CoA. Thus, an ABC transporter for taurine could be postulated, while inducible taurine: pyruvate aminotransferase, alanine dehydrogenase, sulfoacetaldehyde acetyltransferase and sulfite dehydrogenase could be assayed. Whereas phosphate acetyltransferase has been found in other organisms, none was indicated in the genome sequence and no activity was found in cell-free extracts. Instead, acetate kinase was active as was acetate-CoA ligase.
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http://dx.doi.org/10.1111/j.1574-6968.2007.00719.x | DOI Listing |
Int J Syst Evol Microbiol
November 2024
Department of Life Science, Chung-Ang University, Seoul 06974, Republic of Korea.
Two Gram-stain-negative, strictly aerobic, non-motile, rod-shaped bacteria, designated as strains S88 and W115, exhibiting catalase- and oxidase-positive reactions, were isolated from marine red algae in South Korea. Strain S88 exhibited growth at 20-30 °C, pH 6.0-9.
View Article and Find Full Text PDFAppl Environ Microbiol
July 2024
School of Environmental Science and Engineering, Shandong University, Qingdao, China.
Biological valorization of lignin, the second most abundant biopolymer on Earth, is an indispensable sector to build a circular economy and net-zero future. However, lignin is recalcitrant to bioupcycling, demanding innovative solutions. We report here the biological valorization of lignin-derived aromatic carbon to value-added chemicals without requesting extra organic carbon and freshwater via reprogramming the marine clade bacterium .
View Article and Find Full Text PDFMicrobiome
August 2023
School of BioSciences, The University of Melbourne, Parkville, VIC, Australia.
Background: Reef-building corals are acutely threatened by ocean warming, calling for active interventions to reduce coral bleaching and mortality. Corals associate with a wide diversity of bacteria which can influence coral health, but knowledge of specific functions that may be beneficial for corals under thermal stress is scant. Under the oxidative stress theory of coral bleaching, bacteria that scavenge reactive oxygen (ROS) or nitrogen species (RNS) are expected to enhance coral thermal resilience.
View Article and Find Full Text PDFInt J Syst Evol Microbiol
August 2023
Microbial Oceanography Laboratory, School of Earth and Environmental Sciences and Research Institute of Oceanography, Seoul National University, Seoul 08826, Republic of Korea.
A Gram-stain-negative, facultatively anaerobic, non-motile, rod-shaped bacterial strain, designated HL-MP18, was isolated from Arctic seawater after a prolonged incubation employing polypropylene as the sole carbon source. Phylogenetic analyses of the 16S rRNA gene sequence revealed that strain HL-MP18 was affiliated to the genus with close relatives LXJ103 (96.8 %) and KCTC 32327 (96.
View Article and Find Full Text PDFTransl Vis Sci Technol
June 2023
Eye Institute of Shandong First Medical University, Qingdao Eye Hospital of Shandong First Medical University, Qingdao, China.
Purpose: Our objective was to investigate differences in the ocular surface bacterial composition in cataract patients with and without type 2 diabetes (T2D).
Methods: Twenty-four diabetic patients with cataracts (group D) and 14 sex- and age-matched patients with age-related cataracts (group N) were recruited for this study. All samples underwent DNA extraction, fragmentation, purification, library construction, and metagenomic sequencing.
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