Within the frame of an effective, coarse-grained hydrophobic-polar protein model, we employ multicanonical Monte Carlo simulations to investigate free-energy landscapes and folding channels of exemplified heteropolymer sequences, which are permutations of each other. Despite the simplicity of the model, the knowledge of the free-energy landscape in dependence of a suitable system order parameter enables us to reveal complex folding characteristics known from real bioproteins and synthetic peptides, such as two-state folding, folding through weakly stable intermediates, and glassy metastability.
Download full-text PDF |
Source |
---|---|
http://dx.doi.org/10.1103/PhysRevLett.98.048103 | DOI Listing |
Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!