The identification of a gene that activates or regulates a gene or regulon of interest often requires the artificial induction of the regulatory gene. The properties of the Tn10-derived transposon T-POP allow a simple chromosomal survey of genes that, when artificially induced from an adjacent T-POP transposon by the addition of tetracycline, can activate or inhibit the expression of virtually any gene of interest. Procedures for genome-wide screening for T-POP inducible regulatory genes are described in detail. T-POP is a derivative of transposon Tn10dTc. It encodes resistance to tetracycline, but unlike Tn10dTc, the tet(A) and tet(R) promoters do not terminate within the transposon. Instead they continue out into adjacent chromosomal DNA. When this element inserts in a gene, three things will result: (1) the target gene is disrupted by the addition of a large block of DNA (approximately 3000 bases); (2) a drug-resistance gene (tetracycline resistance) included in the inserted material is now 100% linked to the insertion mutant phenotype; and (3) the mRNA transcripts initiated at either the tet(A) or tet(R) promoters (or both) will continue out into the adjacent chromosomal DNA. Despite the fancy aspects, insertion mutants are easy to isolate and can be assayed for effects on gene regulation using simple plate tests.

Download full-text PDF

Source
http://dx.doi.org/10.1016/S0076-6879(06)21014-0DOI Listing

Publication Analysis

Top Keywords

regulatory genes
8
t-pop transposon
8
gene
8
teta tetr
8
tetr promoters
8
continue adjacent
8
adjacent chromosomal
8
chromosomal dna
8
t-pop
5
transposon
5

Similar Publications

The Effects of Nitric Oxide on Choroidal Gene Expression.

J Bioinform Syst Biol

January 2024

Department of Cell Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, 73104, United States.

Purpose: Nitric oxide (NO) is recognized as an important biological mediator that controls several physiological functions, and evidence is now emerging that this molecule may play a significant role in the postnatal control of ocular growth and myopia development. We therefore sought to understand the role that nitric oxide plays in visually-guided ocular growth in order to gain insight into the underlying mechanisms of this process.

Methods: Choroids were incubated in organ culture in the presence of the NO donor, PAPA- NONOate (1.

View Article and Find Full Text PDF

Colorectal cancer (CRC) is one of the most prevalent malignant tumors in the world, and its occurrence and development are closely related to the complex immune regulatory mechanisms. As the first barrier of the body's defense, innate immunity plays a key role in tumor immune surveillance and anti-tumor response, in which type I/III interferon (IFN) is an important mediator with significant antiviral and anti-tumor functions. 5-methylcytosine (m5C) modification of RNA is a key epigenetic regulation that promotes the expression of CRC oncogenes and immune-related genes.

View Article and Find Full Text PDF

Introduction: Macrophages exhibit marked phenotypic heterogeneity within and across disease states, with lipid metabolic reprogramming contributing to macrophage activation and heterogeneity. Chronic inflammation has been observed in human benign prostatic hyperplasia (BPH) tissues, however macrophage activation states and their contributions to this hyperplastic disease have not been defined. We postulated that a shift in macrophage phenotypes with increasing prostate size could involve metabolic alterations resulting in prostatic epithelial or stromal hyperplasia.

View Article and Find Full Text PDF

Background: Pancreatic ductal adenocarcinoma (PDAC) is one of the most lethal forms of cancer, and despite low incidence rates, it remains the sixth leading cause of cancer related deaths worldwide. Immunotherapy, which aims to enhance the immune system's ability to recognize and eliminate cancer cells, has emerged as a promising approach in the battle against PDAC. PARP7, a mono-ADP-ribosyltransferase, is a negative regulator of the type I interferon (IFN-I) pathway and has been reported to reduce anti-tumour immunity.

View Article and Find Full Text PDF

Background: While epidemiological data suggest a connection between atopic dermatitis (AD) and COVID-19, the molecular mechanisms underlying this relationship remain unclear.

Objective: To investigate whether COVID-19-related CpGs may contribute to AD development and whether this association is mediated through the regulation of specific genes' expression.

Methods: We combined Mendelian randomization and transcriptome analysis for data-driven explorations.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!