Thermoviscoelastic linear-response functions are calculated from the master equation describing viscous liquid inherent dynamics. From the imaginary parts of the frequency-dependent isobaric specific heat, isothermal compressibility, and isobaric thermal expansion coefficient, we define a "linear dynamic Prigogine-Defay ratio" LambdaTp(omega) with the property that if LambdaTp(omega)=1 at one frequency, then LambdaTp(omega) is unity at all frequencies. This happens if and only if there is a single-order-parameter description of the thermoviscoelastic linear responses via an order parameter (which may be nonexponential in time). Generalizations to other cases of thermodynamic control parameters than temperature and pressure are also presented.
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J Chem Theory Comput
January 2010
Department of Computer Science, Upson Hall 4130, Cornell University, Ithaca NY 14853-7501
Milestoning is a method for calculating kinetics and thermodynamics of long time processes typically not accessible for straightforward Molecular Dynamics (MD) simulation. In the Milestoning approach, the system of interest is partitioned into cells by dividing hypersurfaces (Milestones) and transitions are computed between nearby hypersurfaces. Kinetics and thermodynamics are derived from the statistics of these transitions.
View Article and Find Full Text PDFJ Chem Phys
February 2007
DNRF Centre Glass and Time, IMFUFA (27), Department of Sciences, Roskilde University, Postbox 260, DK-4000 Roskilde, Denmark.
Thermoviscoelastic linear-response functions are calculated from the master equation describing viscous liquid inherent dynamics. From the imaginary parts of the frequency-dependent isobaric specific heat, isothermal compressibility, and isobaric thermal expansion coefficient, we define a "linear dynamic Prigogine-Defay ratio" LambdaTp(omega) with the property that if LambdaTp(omega)=1 at one frequency, then LambdaTp(omega) is unity at all frequencies. This happens if and only if there is a single-order-parameter description of the thermoviscoelastic linear responses via an order parameter (which may be nonexponential in time).
View Article and Find Full Text PDFPhys Rev E Stat Nonlin Soft Matter Phys
June 2004
Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
In this paper we explore the inherent structures (IS) approach to the dynamics of the East constrained kinetic Ising model. The inherent structures do not capture the nature of the dynamics of many quantities, including the spin autocorrelation function. Simply monitoring the quenched energy fluctuations, i.
View Article and Find Full Text PDFBiophys J
January 2001
Department of Pharmacology and the Biophysics Program, University of Virginia Health System, Charlottesville, Virginia 22908, USA.
A macroscopic model is presented to quantitatively describe lipid bilayer gel to fluid phase transitions. In this model, the Gibbs potential of the lipid bilayer is expressed in terms of a single order parameter q, the average chain orientational order parameter. The Gibbs potential is based on molecular mean-field and statistical mechanical calculations of inter and intrachain interactions.
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