AI Article Synopsis

  • Existing methods struggle to determine the structure and orientation of interfacial proteins like those in cell membranes, even with mature techniques available for bulk proteins.
  • The study uses a combination of sum frequency generation (SFG) and attenuated total reflection-Fourier transform infrared spectroscopy (ATR-FTIR) to analyze the orientation of the alpha-helical peptide melittin in a supported lipid bilayer made of DPPG.
  • Results indicate that simple statistical models are insufficient for understanding melittin’s orientation; instead, two distinct populations representing different states of melittin binding to the bilayer provide a better interpretation of the observed data.

Article Abstract

Despite the availability of several mature structure determination techniques for bulk proteins, determination of structural and orientational information of interfacial proteins, e.g., in cell membranes or on biomaterial surfaces, remains a difficult problem. We combine sum frequency generation (SFG) vibrational spectroscopy with attenuated total reflection-Fourier transform infrared spectroscopy (ATR-FTIR) to investigate the orientation of alpha-helical peptides reconstituted in substrate supported lipid bilayers. Melittin was chosen as a model for alpha-helical peptides, and its orientation when interacting with a supported 1,2-dipalmitoyl-sn-glycero-3-phosphoglycerol (DPPG) bilayer has been examined. Through polarization analysis using amide I signals obtained from both SFG and ATR-FTIR measurements, the orientation distribution of melittin inside a DPPG bilayer was deduced using several trial distribution functions. Melittin was modeled as either an ideal helix or a helix with a bent structure. It was found that a simple distribution function such as a delta-distribution or a Gaussian distribution was not adequate to describe the melittin orientation distribution inside a DPPG bilayer. Instead, two populations of melittin, corresponding to two melittin-bilayer association states, could be used to interpret the experimentally observed result. The method employed in this study demonstrates the feasibility of acquiring a more accurate orientation distribution of peptides/proteins in situ using a combination of vibrational spectroscopic techniques without exogenous labeling.

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http://dx.doi.org/10.1021/ja067446lDOI Listing

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