AI Article Synopsis
- The Stanford Microarray Database (SMD) is a global research platform for storing, annotating, analyzing, and sharing microarray-generated data.
- SMD supports multiple microarray platforms and allows for seamless data exchange with MIAME and MAGE-ML standards, making it a valuable resource for researchers.
- The platform also offers open access to analysis tools, public data from numerous publications, and its source code under an Open Source license, promoting collaboration and further development.
Article Abstract
The Stanford Microarray Database (SMD; http://smd.stanford.edu/) is a research tool and archive that allows hundreds of researchers worldwide to store, annotate, analyze and share data generated by microarray technology. SMD supports most major microarray platforms, and is MIAME-supportive and can export or import MAGE-ML. The primary mission of SMD is to be a research tool that supports researchers from the point of data generation to data publication and dissemination, but it also provides unrestricted access to analysis tools and public data from 300 publications. In addition to supporting ongoing research, SMD makes its source code fully and freely available to others under an Open Source license, enabling other groups to create a local installation of SMD. In this article, we describe several data analysis tools implemented in SMD and we discuss features of our software release.
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| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1781111 | PMC |
| http://dx.doi.org/10.1093/nar/gkl1019 | DOI Listing |
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