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Draft genomes and assemblies of the ectomycorrhizal basidiomycetes hr and jo associated with chestnut trees.
J Genomics
January 2025
Université de Lorraine, INRAE, UMR 1136 Interactions Arbres/Microorganismes, 54280, Champenoux, France.
The earthball , an ectomycorrhizal basidiomycete belonging to the Sclerodermataceae family, serves as a significant mutualistic tree symbiont globally. Originally, two genetically sequenced strains of this genus were obtained from fruiting bodies collected under chestnut trees (). These strains were utilized to establish ectomycorrhizal roots of chestnut seedlings.
View Article and Find Full Text PDFHighly accurate Korean draft genomes reveal structural variation highlighting human telomere evolution.
Nucleic Acids Res
January 2025
Korea Bioinformation Center, Korea Research Institute of Bioscience & Biotechnology, 125, Gwahak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.
Given the presence of highly repetitive genomic regions such as subtelomeric regions, understanding human genomic evolution remains challenging. Recently, long-read sequencing technology has facilitated the identification of complex genetic variants, including structural variants (SVs), at the single-nucleotide level. Here, we resolved SVs and their underlying DNA damage-repair mechanisms in subtelomeric regions, which are among the most uncharted genomic regions.
View Article and Find Full Text PDFWhole-Genome Sequencing of Strain d21.2 Isolated in the Republic of Dagestan, Russia.
Microorganisms
November 2024
All-Russia Research Institute for Agricultural Microbiology, 196608 St. Petersburg, Russia.
Pesticide-free agriculture is a fundamental pillar of environmentally friendly agriculture. To this end, there is an active search for new bacterial strains capable of synthesizing secondary metabolites and toxins that protect crops from pathogens and pests. In this study, we isolated a novel strain d21.
View Article and Find Full Text PDFA chromosome-anchored reference assembly for the gray snapper, Lutjanus griseus.
Mol Biol Rep
January 2025
School of Ocean Science and Engineering, The University of Southern Mississippi, Ocean Springs, MS, 39564, USA.
Background: The gray snapper (Lutjanus griseus) is a marine reef fish commonly found in coastal and shelf waters of the tropical and subtropical western Atlantic Ocean. In this work, a draft reference genome was developed to support population genomic studies of gray snapper needed to assist with conservation and fisheries management efforts.
Methods And Results: Hybrid assembly of PacBio and Illumina sequencing reads yielded a 1,003,098,032 bp reference across 2039 scaffolds with N50 and L50 values of 1,691,591 bp and 163 scaffolds, respectively.
High-quality draft genomes of ecologically and geographically diverse species.
Microbiol Resour Announc
December 2024
Entheome Foundation, Oakland, California, USA.
is a genus of mushroom-forming fungi with ecological, ethnomycological, and clinical importance due to psilocybin production by most species. We present five genomes that enable deeper discovery and analysis of the psilocybin gene cluster and increase taxonomic resolution within : , nom. prov.
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