Crystallographic protein model-building on the web.

Bioinformatics

Department of Computer Science, Texas A&M University, 301 H.R. Bright Building, College Station, TX 77843-3112, USA.

Published: February 2007

Unlabelled: X-ray crystallography is the most widely used method to determine the 3D structure of protein molecules. One of the most difficult steps in protein crystallography is model-building, which consists of constructing a backbone and then amino acid side chains into an electron density map. Interpretation of electron density maps represents a major bottleneck in protein structure determination pipelines, and thus, automated techniques to interpret maps can greatly improve the throughput. We have developed WebTex, a simple and yet powerful web interface to TEXTAL, a program that automates this process of fitting atoms into electron density maps. TEXTAL can also be downloaded for local installation.

Availability: Web interface, downloadable binaries and documentation at http://textal.tamu.edu

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btl584DOI Listing

Publication Analysis

Top Keywords

electron density
12
density maps
8
web interface
8
crystallographic protein
4
protein model-building
4
model-building web
4
web unlabelled
4
unlabelled x-ray
4
x-ray crystallography
4
crystallography method
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!