Stochastic simulation of catalytic surface reactions in the fast diffusion limit.

J Chem Phys

Department of Chemical and Biological Engineering, University of Wisconsin-Madison, Wisconsin 53706-1607, USA.

Published: November 2006

The master equation of a lattice gas reaction tracks the probability of visiting all spatial configurations. The large number of unique spatial configurations on a lattice renders master equation simulations infeasible for even small lattices. In this work, a reduced master equation is derived for the probability distribution of the coverages in the infinite diffusion limit. This derivation justifies the widely used assumption that the adlayer is in equilibrium for the current coverages and temperature when all reactants are highly mobile. Given the reduced master equation, two novel and efficient simulation methods of lattice gas reactions in the infinite diffusion limit are derived. The first method involves solving the reduced master equation directly for small lattices, which is intractable in configuration space. The second method involves reducing the master equation further in the large lattice limit to a set of differential equations that tracks only the species coverages. Solution of the reduced master equation and differential equations requires information that can be obtained through short, diffusion-only kinetic Monte Carlo simulation runs at each coverage. These simulations need to be run only once because the data can be stored and used for simulations with any set of kinetic parameters, gas-phase concentrations, and initial conditions. An idealized CO oxidation reaction mechanism with strong lateral interactions is used as an example system for demonstrating the reduced master equation and deterministic simulation techniques.

Download full-text PDF

Source
http://dx.doi.org/10.1063/1.2390696DOI Listing

Publication Analysis

Top Keywords

master equation
32
reduced master
20
diffusion limit
12
master
8
equation
8
lattice gas
8
spatial configurations
8
small lattices
8
infinite diffusion
8
method involves
8

Similar Publications

Several studies have demonstrated the positive effects of mindfulness and self-compassion on employee well-being, mental health, and resilience. The objective of this observational study was to explore the mutual relationships among the dimensions of self-compassion and particular characteristics of work-related well-being: work engagement, workaholism (excessive and compulsive work), and job boredom in a population of early career workers. In this quantitative cross-sectional study, 286 master's students with proper working experience were examined; results from 244 respondents were suitable for further data analysis.

View Article and Find Full Text PDF

Uncovering dissipation from coarse observables: A case study of a random walk with unobserved internal states.

J Chem Phys

January 2025

Department of Chemistry and Oden Institute for Computational Engineering and Sciences, University of Texas at Austin, Austin, Texas 78712, USA.

Inferring underlying microscopic dynamics from low-dimensional experimental signals is a central problem in physics, chemistry, and biology. As a trade-off between molecular complexity and the low-dimensional nature of experimental data, mesoscopic descriptions such as the Markovian master equation are commonly used. The states in such descriptions usually include multiple microscopic states, and the ensuing coarse-grained dynamics are generally non-Markovian.

View Article and Find Full Text PDF

Entanglement and quantum discord in the cavity QED models.

Heliyon

January 2025

Faculty of Computational Mathematics and Cybernetics, Lomonosov Moscow State University, Vorobyovy Gory 1, Moscow, 119991, Russia.

We investigate the quantum correlation between light and matter in bipartite quantum systems, drawing on the Jaynes-Cummings model and the Tavis-Cummings model, which are well-established in cavity quantum electrodynamics. Through the resolution of the quantum master equation, we can derive the dissipative dynamics in open systems. To assess the extent of quantum correlation, several measures are introduced: von Neumann entropy, concurrence and quantum discord.

View Article and Find Full Text PDF

Pressure-dependent kinetic analysis of the NH potential energy surface.

Phys Chem Chem Phys

January 2025

Wolfson Department of Chemical Engineering, Technion - Israel Institute of Technology, Haifa 3200003, Israel.

The pressure-dependent reactions on the NH potential energy surface (PES) have been investigated using CCSD(T)-F12/aug-cc-pVTZ-F12//B2PLYP-D3/aug-cc-pVTZ. This study expands the NH PES beyond the previous literature by incorporating a newly identified isomer, NHN, along with additional bimolecular reaction channels associated with this isomer, namely NNH + H and HNN(S) + H. Rate coefficients for all relevant pressure-dependent reactions, including well-skipping pathways, are predicted using a combination of transition state theory and master equation simulations.

View Article and Find Full Text PDF

We study Hopfield networks with non-reciprocal coupling inducing switches between memory patterns. Dynamical phase transitions occur between phases of no memory retrieval, retrieval of multiple point-attractors, and limit-cycle attractors. The limit cycle phase is bounded by two critical regions: a Hopf bifurcation line and a fold bifurcation line, each with unique dynamical critical exponents and sensitivity to perturbations.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!